Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00783 | ATGGGAGCCGGGTTGAAACTGATAGTTGTGTTCGATTTGAATCCCGCCATTCTGTTAATTCCTCAGAGCAACAATGAAAGCTGTCCAAAGGGGAGCGTAGCTGCTCGTAGTTTTACGTTCCGTGAACTTGCCATGGCTACAAGAGGTTTCAGAGAAGTAAATTTGCTTGGAGAGGGTGGTTTTGGACGTGTCTACAAAGGACGTTTGGAAACAGGACAGATTGTTGCAGTTAAACAGCTCAATCGTGATGGGCTTCAAGGCTTTCAGGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATCGATTTGGGTACTGACAAAAGGCCACTGAGTTGGAATACGAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGCCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATACCGTGACTTGAAATCAGCTAATATCTTATTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGACTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGGACATATGGATATTGTGCTCCAGAGTATGCCATGAGTGGCAAATTAACCCTTAAATCTGATATTTACAGCTTTGGCGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGGTGATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGATCGAAGAAAGTACGCGGAATTAGTTGATCCCCAGTTGGAAGGACACTTCCCTCTACGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTTCAGGAACAACCATCATTTCGGCCTCTTATTAGTGATATTGTTGTAGCACTCGAGTATTTGGCCTCTCAAAGTCATTTACGAGAACTACGCAATGGTACGATTCACAATTCATCACAATCATCACCCTCACAACAGAATGGGGACACCCATACCCAGGAATCAGATCCCTGA | 1011 | 44.71 | MGAGLKLIVVFDLNPAILLIPQSNNESCPKGSVAARSFTFRELAMATRGFREVNLLGEGGFGRVYKGRLETGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIDLGTDKRPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKYAELVDPQLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLASQSHLRELRNGTIHNSSQSSPSQQNGDTHTQESDP | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 16217990 | 16221614 | + | Lsi08G007830.1 | Lsi08g00783 | 668709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00783 | 336 | Gene3D | Transferase(Phosphotransferase) domain 1 | 32 | 108 | - | - | |
Lsi08g00783 | 336 | SUPERFAMILY | Protein kinase-like (PK-like) | 29 | 298 | IPR011009 | - | |
Lsi08g00783 | 336 | PANTHER | OS07G0668900 PROTEIN | 30 | 111 | - | - | |
Lsi08g00783 | 336 | SMART | serkin_6 | 50 | 300 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00783 | 336 | MobiDBLite | consensus disorder prediction | 313 | 336 | - | - | |
Lsi08g00783 | 336 | PANTHER | OS07G0668900 PROTEIN | 30 | 111 | - | - | |
Lsi08g00783 | 336 | PANTHER | OS07G0668900 PROTEIN | 109 | 328 | - | - | |
Lsi08g00783 | 336 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 321 | - | - | |
Lsi08g00783 | 336 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 146 | 158 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi08g00783 | 336 | ProSiteProfiles | Protein kinase domain profile. | 50 | 300 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00783 | 336 | PIRSF | ILK | 111 | 312 | - | - | |
Lsi08g00783 | 336 | PIRSF | ILK | 20 | 124 | - | - | |
Lsi08g00783 | 336 | Pfam | Protein kinase domain | 119 | 294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00783 | 336 | Pfam | Protein kinase domain | 51 | 116 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00783 | 336 | ProSitePatterns | Protein kinases ATP-binding region signature. | 56 | 78 | IPR017441 | GO:0005524 | |
Lsi08g00783 | 336 | PANTHER | OS07G0668900 PROTEIN | 109 | 328 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g01809 | Lsi08g00783 | CCT | |
Lsi04g01809 | Lsi08g00783 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01809 | Lsi-Chr4:25327852 | Lsi08g00783 | Lsi-Chr8:16217990 | 1.80E-169 | dispersed | |
Lsi08g00783 | Lsi-Chr8:16217990 | Lsi05g01512 | Lsi-Chr5:22909461 | 4.89E-141 | dispersed | |
Lsi08g00783 | Lsi-Chr8:16217990 | Lsi03g02064 | Lsi-Chr3:31958333 | 1.96E-139 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83841 | PF00069 | Pkinase | 1.10E-26 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00783 | - | - | csv:101217131 | 550.821 |