Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00783 ATGGGAGCCGGGTTGAAACTGATAGTTGTGTTCGATTTGAATCCCGCCATTCTGTTAATTCCTCAGAGCAACAATGAAAGCTGTCCAAAGGGGAGCGTAGCTGCTCGTAGTTTTACGTTCCGTGAACTTGCCATGGCTACAAGAGGTTTCAGAGAAGTAAATTTGCTTGGAGAGGGTGGTTTTGGACGTGTCTACAAAGGACGTTTGGAAACAGGACAGATTGTTGCAGTTAAACAGCTCAATCGTGATGGGCTTCAAGGCTTTCAGGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATCGATTTGGGTACTGACAAAAGGCCACTGAGTTGGAATACGAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGCCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATACCGTGACTTGAAATCAGCTAATATCTTATTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGACTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGGACATATGGATATTGTGCTCCAGAGTATGCCATGAGTGGCAAATTAACCCTTAAATCTGATATTTACAGCTTTGGCGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGGTGATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGATCGAAGAAAGTACGCGGAATTAGTTGATCCCCAGTTGGAAGGACACTTCCCTCTACGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTTCAGGAACAACCATCATTTCGGCCTCTTATTAGTGATATTGTTGTAGCACTCGAGTATTTGGCCTCTCAAAGTCATTTACGAGAACTACGCAATGGTACGATTCACAATTCATCACAATCATCACCCTCACAACAGAATGGGGACACCCATACCCAGGAATCAGATCCCTGA 1011 44.71 MGAGLKLIVVFDLNPAILLIPQSNNESCPKGSVAARSFTFRELAMATRGFREVNLLGEGGFGRVYKGRLETGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIDLGTDKRPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKYAELVDPQLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLASQSHLRELRNGTIHNSSQSSPSQQNGDTHTQESDP 336
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 16217990 16221614 + Lsi08G007830.1 Lsi08g00783 668709
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00783 336 Gene3D Transferase(Phosphotransferase) domain 1 32 108 - -
Lsi08g00783 336 SUPERFAMILY Protein kinase-like (PK-like) 29 298 IPR011009 -
Lsi08g00783 336 PANTHER OS07G0668900 PROTEIN 30 111 - -
Lsi08g00783 336 SMART serkin_6 50 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00783 336 MobiDBLite consensus disorder prediction 313 336 - -
Lsi08g00783 336 PANTHER OS07G0668900 PROTEIN 30 111 - -
Lsi08g00783 336 PANTHER OS07G0668900 PROTEIN 109 328 - -
Lsi08g00783 336 Gene3D Transferase(Phosphotransferase) domain 1 109 321 - -
Lsi08g00783 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Lsi08g00783 336 ProSiteProfiles Protein kinase domain profile. 50 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00783 336 PIRSF ILK 111 312 - -
Lsi08g00783 336 PIRSF ILK 20 124 - -
Lsi08g00783 336 Pfam Protein kinase domain 119 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00783 336 Pfam Protein kinase domain 51 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00783 336 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Lsi08g00783 336 PANTHER OS07G0668900 PROTEIN 109 328 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi04g01809 Lsi08g00783 CCT
Lsi04g01809 Lsi08g00783 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01809 Lsi-Chr4:25327852 Lsi08g00783 Lsi-Chr8:16217990 1.80E-169 dispersed
Lsi08g00783 Lsi-Chr8:16217990 Lsi05g01512 Lsi-Chr5:22909461 4.89E-141 dispersed
Lsi08g00783 Lsi-Chr8:16217990 Lsi03g02064 Lsi-Chr3:31958333 1.96E-139 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83841 PF00069 Pkinase 1.10E-26 CL0016 Lsi PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00783 - - csv:101217131 550.821