Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00786 ATGGGCAATCTCTGCGGCACTCCTGTCGATACTCACACCCCTCCTCCTACTAAACCTTCTTCCCCAGCTACTTCCAATCGACACACGACGCCGCAGAATCTGAAGGTTTACAACCTGACGGAGCTGAAGACGGCAACCAGGAATTTCCGGCCAGATACGATGCTGGGGGAGGGGGGATTTGGAAGGGTGTTTAAAGGATGGGTGGACGAGGTGAGTTACGCGCCGTCCAAGGTCGGCGTCGGAATTCCCGTCGCCGTTAAAAAGTCAAACCCAGACAGCTCTCAGGGTCTACGCGAATGGAAGGCTGAAGTGGAATTTCTGGGAAAATTCAGCCATCCAAATGTGGTGAAATTGATCGGATATTGTTGGGAAGAAAAGCAATTTCTCCTCGTGTACGAGTACATGCAGAGGGGTAGTTTAGAAAACCACTTGTTTCGAAAAGGCGTAGAACCTCTATCATGGGAAACACGAATTAAAATAGCTACTGGGGCGGCTTCTGGTTTGACGTTCCTCCACACGTCTGAGAAGAGCGTGATTTACCGCGATTTTAAGGCGTCGAATATTCTCTTGGATGGGAACTTTAACCCAAAGTTGTCAGACTTTGGGCTTGCCAAACTGGGCCCATCCAATGGTAACTCCCACGTCAGCACAAATCCAGTTGGCACCTACGGCTATGCTGCACCTGAGTACATTGCAACTGGACATTTGTACATAAAAAGTGACGTGTACGGGTTCGGTGTGGTTCTCCTGGAGCTGCTGACCGGACTACGGGCAGTGGACCCAAACCGGCCGAGTGGGTCTCACAACTTGGTGGGGTGGGCCGAGCCATCACTGAGCAGCAAGAAGAAGATAAAGAAACTGATAGACCCAAGGCTTGGGGATGACTACTCGCCCAAAGGAGCCTGGGCCACAGCCGAACTGATATTAAAATGCTTGGAATCGGATCCCAGAAAGCGGCCCTCCATGGAGGAGGTTTTGGTGATTCTAGAAAAAATCAGTTCTTTTAAAGACAGGCCCAAGGAGCCCAAATCAAGGGCTAGGACGCCCAACCATTATTGA 1059 50.71 MGNLCGTPVDTHTPPPTKPSSPATSNRHTTPQNLKVYNLTELKTATRNFRPDTMLGEGGFGRVFKGWVDEVSYAPSKVGVGIPVAVKKSNPDSSQGLREWKAEVEFLGKFSHPNVVKLIGYCWEEKQFLLVYEYMQRGSLENHLFRKGVEPLSWETRIKIATGAASGLTFLHTSEKSVIYRDFKASNILLDGNFNPKLSDFGLAKLGPSNGNSHVSTNPVGTYGYAAPEYIATGHLYIKSDVYGFGVVLLELLTGLRAVDPNRPSGSHNLVGWAEPSLSSKKKIKKLIDPRLGDDYSPKGAWATAELILKCLESDPRKRPSMEEVLVILEKISSFKDRPKEPKSRARTPNHY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16245337 16249074 + Lsi08G007860.1 Lsi08g00786 668712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00786 352 ProSitePatterns Protein kinases ATP-binding region signature. 55 88 IPR017441 GO:0005524
Lsi08g00786 352 MobiDBLite consensus disorder prediction 1 32 - -
Lsi08g00786 352 PANTHER OS01G0588500 PROTEIN-RELATED 25 347 - -
Lsi08g00786 352 Gene3D Transferase(Phosphotransferase) domain 1 135 348 - -
Lsi08g00786 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Lsi08g00786 352 CDD STKc_IRAK 55 332 - -
Lsi08g00786 352 Gene3D Phosphorylase Kinase; domain 1 20 134 - -
Lsi08g00786 352 SUPERFAMILY Protein kinase-like (PK-like) 23 330 IPR011009 -
Lsi08g00786 352 Pfam Protein tyrosine and serine/threonine kinase 53 326 IPR001245 GO:0004672|GO:0006468
Lsi08g00786 352 ProSiteProfiles Protein kinase domain profile. 49 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00786 352 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 25 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00786 - - - csv:101216893 672.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00786 Lsi-Chr8:16245337 Lsi11g01284 Lsi-Chr11:21445174 6.01E-144 dispersed
Lsi08g00785 Lsi-Chr8:16225613 Lsi08g00786 Lsi-Chr8:16245337 1.92E-82 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g93 . . . . . . . . Cmo05g00995 . . . . . . . . Bhi04g01226 . . . . . . Cla08g00941 . . . . . . . . . Cone20ag0022 . . . Cme03g01341 . . . . . . . . . . . . Cma05g00976 . . Cpe11g00786 . . . . . . . . . . . . . . . Lsi08g00786 . Chy03g00616 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83843 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00786 Lsi_Chr08 FPKM 10.274648 13.339084 19.410345 20.576378 10.035522 9.098261 11.304887 27.093616 28.038557 27.926373