Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00787 ATGATATACCGGCCTTCAAGTGCGTACAACACCCCATTCTGCACGACGAACTCCGGCGCACCAGTATGGAACAACACCGCCGTGATGTCCGTCGGAGAACGAGGTCCAATCCTCTTAGAAGACTACCAACTCATCGAAAAAATCGCAACTTTCACCCGCGAACGAATCCCAGAGCGAGTAGTTCACGCTCGAGGAGCCAGCGCCAAGGGTTTCTTCGAAGTAACCCACGACATCTCCGACCTAACCTGCGCCGACTTCCTCCGCGCTCCGGGTGTCCAAACCCCCGTCATCGTCCGTTTCTCCACCGTCATCCACGAGCGCGGCAGCCCTGAAACTCTCCGTGACCCACGTGGATTCGCCGTCAAATTCTACACACGTGAAGGCAACTTCGATATAGTCGGCAACAATTTCCCCGTGTTCTTCGTACGTGACGCTATGCAATTCCCTGACGTCATCCGTGCCTTCAAACCCAACCCGAAATCCCACCTCCAAGAGCCATGGAGATTCCTCGATTTCTGCTCTTACCATCCTGAAAGCCTCTTGTCTTTCGCTTGGTTCTACGATGACGTCGGCATCCCAATCAACTACCGCCACATGGAAGGCTTCGGCGTTCAAGCCTACTCTCTAATCAACAAAGCTGGCAAAGCCCGCCTTGTAAAATTCCATTGGAAACCCACTTGTGGTGTGAAAAGCATGCTGGAGGATGAAGCCGTAAGAATTGGTGGGACCAACCATAGTCACGCAACTCAAGACTTGTACGAGTCTATTGCAGCTGGGAATTTCCCTGAGTGGAGACTTTACATTCAGACCATTGATTATGAAGACCAGAACAACTACGACTTTGAACCGTTGGATACGACCATTTCTTGGCCTGAAGATGTGATACCGTTGCAACCGGTGGGACGGTTGGTTTTGAATAAGAATATTGATAACTTCTTTGCGGAGAATGAGATGTTGGCATTTTCAATGTCGTTAGTGCCTGGGATTCATTACTCAGATGATAAAATGTTGCAAGCTAGGAGTTTTGCTTATGCGGATACACAAAGGCATCGGCTTGGACCTAATTATCTTCAACTCCCAGTGAATGCTCCTAAATGTCCTCACCATAATAACCACCATGAAGGATTCATGAACTTCATGCATAGGGATGAGGAGGTGAATTACTTCCCTTCGAGATATGATCCTTGTCGCCATGCTGAGAAGTTCCCGATGCCGCCCAATGTATTGAGCGGAAAAAGAGAGAGGTGTGTGATTCCCAAGGAGAATCATAACTTTAAGCAAGCTGGAGACAGATACCGATCATGGGCACCAGACAGGCAAGAGCGGTTCGTGAGGCGATTTGTGGAAGCGTTATCGGACCCCCGCGTGACACACGAGGTTCGCAACATCTGGATCTCGTATTGGACTCAGGCTGACAGGTCACTGGGCCAAAAGATAGCGTCTCGTGTGAATGTGAGGCCAAGCATCTAA 1470 49.8 MIYRPSSAYNTPFCTTNSGAPVWNNTAVMSVGERGPILLEDYQLIEKIATFTRERIPERVVHARGASAKGFFEVTHDISDLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDIVGNNFPVFFVRDAMQFPDVIRAFKPNPKSHLQEPWRFLDFCSYHPESLLSFAWFYDDVGIPINYRHMEGFGVQAYSLINKAGKARLVKFHWKPTCGVKSMLEDEAVRIGGTNHSHATQDLYESIAAGNFPEWRLYIQTIDYEDQNNYDFEPLDTTISWPEDVIPLQPVGRLVLNKNIDNFFAENEMLAFSMSLVPGIHYSDDKMLQARSFAYADTQRHRLGPNYLQLPVNAPKCPHHNNHHEGFMNFMHRDEEVNYFPSRYDPCRHAEKFPMPPNVLSGKRERCVIPKENHNFKQAGDRYRSWAPDRQERFVRRFVEALSDPRVTHEVRNIWISYWTQADRSLGQKIASRVNVRPSI 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16250999 16255415 - Lsi08G007870.1 Lsi08g00787 668713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00787 489 PIRSF Catalase_clade1-3 5 488 IPR024711 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 Pfam Catalase-related immune-responsive 421 482 IPR010582 -
Lsi08g00787 489 ProSitePatterns Catalase proximal active site signature. 51 67 IPR024708 GO:0004096
Lsi08g00787 489 ProSiteProfiles catalase family profile. 11 489 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 PANTHER CATALASE 3 489 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 CDD catalase_clade_1 15 483 - -
Lsi08g00787 489 Gene3D Catalase core domain 12 488 - -
Lsi08g00787 489 ProSitePatterns Catalase proximal heme-ligand signature. 340 348 IPR002226 GO:0020037
Lsi08g00787 489 SMART Catalase_2 15 397 IPR011614 GO:0004096|GO:0020037
Lsi08g00787 489 Pfam Catalase 15 394 IPR011614 GO:0004096|GO:0020037
Lsi08g00787 489 PRINTS Catalase signature 91 109 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 PRINTS Catalase signature 327 353 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 PRINTS Catalase signature 296 323 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 PRINTS Catalase signature 131 149 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 PRINTS Catalase signature 28 51 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 PRINTS Catalase signature 112 129 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi08g00787 489 SUPERFAMILY Heme-dependent catalase-like 9 486 IPR020835 GO:0020037
Lsi08g00787 489 PANTHER CATALASE 3 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00787 K03781 katE, CAT, catB, srpA; catalase [EC:1.11.1.6] - csv:101216662 1008.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01805 Lsi08g00787 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01805 Lsi-Chr4:25268800 Lsi08g00787 Lsi-Chr8:16250999 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g98 Blo01g01636 Blo12g00854 . Bda03g00319 Bpe02g00309 Bpe04g00280 Bma04g00287 Bma01g02409 Cmo05g00996 Cmo12g00616 Cma01g02012 Cma09g00054 Car01g01582 Car12g00658 . Cpe06g00023 Cpe07g00589 Bhi04g01227 . . . Hepe08g1506 . . Cla08g00942 Cam08g1392 Cec08g0974 Cco08g1097 Clacu08g1099 . Cre08g0883 . . . . Lsi04g01805 Csa04g02699 . Cme03g01342 . . Bda11g00972 . . . . . Sed08g1839 . . Cma12g00678 Cma05g00977 Car05g00858 Car09g00047 Cpe11g00788 Cpe02g00036 Bhi09g02890 Tan01g5104 Cmetu03g1562 . Hepe01g2339 Mch11g0058 . Cla11g01822 Cam11g1888 Cec11g1913 Cco11g1920 Clacu11g2052 Cmu11g1857 Cre11g2263 Lsi08g00787 . Chy07g00390 Cme07g00057
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001453 3 3 2 3 3 1 4 2 1 3 1 2 4 3 1 2 1 3 4 2 3 2 2 2 2 1 2 5 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00787 Lsi_Chr08 FPKM 9.045943 8.738737 7.042277 9.293407 3.667607 4.27032 4.139831 14.294144 13.052128 13.87249