Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00797 ATGTCTTCGTTGACTCTTAAACCCTCCTTTTCCACCCCTAAATTGTCTTTCCCCCCATCATCTTCTTCGTCTTCCTTTACTTTTCCTAGCTTCTCTCCAATTTCCTTCCCTAGGAAGCTGAGAAATGGTCTCTCGTTGCGACTCCGTGCTTACGACCCTTCCAAGAGCGACAATCCCGATGCCTCCACTGGCGATTCCAAGCCTCCCAACGGTACTTTGCCAAAAACTCGGAGAGACATTCTGCTGGAATATGTTAAAACTGTCCAGCCAGAATTCATGGAATTGTTTGTTCAGAGGGCACCACAACAGGTTGTTGAAGCAATGCGCCAAACAGTCACAAATATGATTGGAACTCTACCTCCACAGTTTTTTGCAGTTACTGTTACCACAGTTGCTGAAAATCTTGCACAGCTCATGTACAGTGTAATGATGACTGGATATATGTTTAAAAATGCTCAAAATCGCTTAGAACTGCAGCAAAGTTTAGAGCAGGTTGCTCTCCCAGAACCAAAGGATGAAAAGTTCAAGGATCCTTCTTTTCTTCCTAATTTGTCATTGTTCTCAGGTCACATAGTGCCTGTAAAAACATTCTTATACAATTTCATTATGAATTTCTCTGTTGTTGACAAACTTACGGATGATTTGAATTATGCAGCTGGTACGCAAAAGAATGTCACAGGTGAAGTTATCAGGTGGAATAATGTATCGGGTCCCGAGAGAATTGATGCTAAAAGGTACATAGAATTACTTGAAGCAGAGATAGAGGAACTGAATCGTCAAGTAGGTAGAAAATCAGCAAATGGGCAAAATGAACTCTTGGAATATCTCAAAACACTTGAACCCCAAAATCTGAAGGAGTTGACAAGTAGCGCTGGTGAGGATGCTGTCGTTGCAATGAATACATTCATAAAGCGCCTATTAGTGGTCTCAGATCCAAGTCAAATCAAGACAACTGTAACAGAGACAACAGCACCAGAGCTGGCAAAGCTTCTGTATTGGCTAATGGTGGTTGGGTACAGCATTCGCAACATCGAAGTTCGATTCGACATGGAAAGAATTCTGGGGAGTTCACCGAAGCTTGCAGAATTACCTCCTGGAGAAATTGTGTAA 1110 42.25 MSSLTLKPSFSTPKLSFPPSSSSSSFTFPSFSPISFPRKLRNGLSLRLRAYDPSKSDNPDASTGDSKPPNGTLPKTRRDILLEYVKTVQPEFMELFVQRAPQQVVEAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQNRLELQQSLEQVALPEPKDEKFKDPSFLPNLSLFSGHIVPVKTFLYNFIMNFSVVDKLTDDLNYAAGTQKNVTGEVIRWNNVSGPERIDAKRYIELLEAEIEELNRQVGRKSANGQNELLEYLKTLEPQNLKELTSSAGEDAVVAMNTFIKRLLVVSDPSQIKTTVTETTAPELAKLLYWLMVVGYSIRNIEVRFDMERILGSSPKLAELPPGEIV 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16354724 16359522 + Lsi08G007970.1 Lsi08g00797 668723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00797 369 MobiDBLite consensus disorder prediction 50 76 - -
Lsi08g00797 369 Pfam Protein of unknown function (DUF760) 271 354 IPR008479 -
Lsi08g00797 369 Pfam Protein of unknown function (DUF760) 81 162 IPR008479 -
Lsi08g00797 369 MobiDBLite consensus disorder prediction 1 37 - -
Lsi08g00797 369 PANTHER OS02G0833400 PROTEIN 19 368 - -
Lsi08g00797 369 MobiDBLite consensus disorder prediction 1 32 - -
Lsi08g00797 369 Coils Coil 240 267 - -
Lsi08g00797 369 MobiDBLite consensus disorder prediction 56 70 - -
Lsi08g00797 369 PANTHER OS02G0833400 PROTEIN 19 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00797 - - - csv:101214493 529.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01438 Lsi-Chr3:25330177 Lsi08g00797 Lsi-Chr8:16354724 3.35E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g115 Blo01g01625 . . . Bpe02g00317 . . Bma01g02400 Cmo05g01005 Cmo12g00612 . . . Car12g00654 Sed08g1831 . Cpe07g00585 Bhi04g01568 Tan02g1531 Cmetu03g1799 . Hepe08g1489 . Lcy13g2253 Cla08g00952 Cam08g1405 Cec08g0985 Cco08g1108 Clacu08g1109 . Cre08g0892 . . Cone17ag1445 Cone20ag0031 . . . Cme03g01352 . . Bda11g00962 . . . . . . . . Cma12g00674 Cma05g00987 Car05g00867 . Cpe11g00796 . . . . . . . . . . . . . . . Lsi08g00797 . Chy03g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008235 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00797 Lsi_Chr08 FPKM 3.581213 5.10301 8.62614 7.959866 7.772555 8.105373 8.534637 9.561511 9.650467 9.106488