Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00802 ATGGGCTGTGCCTCCTCCAAGCTCGACAACCTTCCGGCAGTGGCTCTCTGCCGTGACCGTTGCAAATTTCTTGACCAAGCTCTCAGTTTTACCCATTCTCTCATTGATTCCCACTCTGCTTATGCTGATTCACTCAACAAAGTCGCCTCCGCTCTCCGCCGTTTGTTTGACCAAGACGGTGAAAGCGGCGGTGGCGATTTGAAATGTCCTCCACCGCCGACTGCCGCCCCTAAAATGGAGAGATCGGATTCTGATTCTGATTCTGATTCCGACTCCGGTTCCGATTCTGATTCCGAAGAAGAAGAAGATGGGTGTTTTAATCAGAGGAAACCACAATCTCCCCCGGTTGGAAGTTTCATGTTCTCGAATTACGACTCAGCAAGAGGACAGCCGCCACCGCCGCCGCCGACCGGCTCATCGTGGGATTTCTTCAATTTCTTTGAAACCTACGAGAGATACGAACAACCCATTTTCAATTGGGACCGGGAAGGAGCAGATCAGAAGTTACAAACAACAAGAGTTGTGGCGAAGAAGAAGAAGAAGAAACCGGCGGTGGTTGTTGATTCGAAGAAAAATGAGGAAGCTGAAAAAGCAAACCAACCGGAAAAGAAGATTGATGATCCAAAGATGGGTGTGTTAGATTTGATGGGAGAAATTAAGGGCTCCTTTGAAAAAGCATCGGAATCGAGCAATTCCATTTCCAAGCTGCTTTCTTATGGTCAAAGAATGAGTTTTTGCAAAGATACAAGAACAGGCTCGCGAGGTTTATTGTCTACTTTGAAGAAGCTGTGTGTTTGGGAGCAGAAACTGTACTTGGAAGTGAAGGCTGAGGAGAGATTGCGTATGATTTTGGAGAAGAAATGCCGGCAGCTGAAGAATTTGGTGGAGAAGAAGTCTGATGCTCTGAAAATTGATTCCCTTCGAAATTCCATCAGAAATTTGTCGATCAAATTGAAAATTTCAATTCAGGTTGTTGATAGGATTTCGATTACAATAAGCAAATTGAGGGATGAAGAATTTTTAGCAGAGATGAACGAATTGATTCATGGATTACAGAGCATGTGGAAAGCCATGTCAGAATCTCACAAGCAACAAACCCAAGCACTAACAGACTCCAAACCCTTCGAATCAATCCTCAACGGCGCTCTCGACGACGCTCATCTGGAAGCCGCCATGGATCTAAAACTCGAGCTCGAGAATTGGAGATCAAATTTCATCGATTTAATCGCCACCCAAAAGGACTGCATCAAAGCCCTCAACGGTTGGCTTCTCCGATGCCTATTATACGAGCCCGAGCCCGAAGAGACCCCCAACGGTGGTTGCCCGCCGCCATTCTCTCCGGCCAGAATCGGGGCTCCTCCCGTGTTTGTAATCGGCCACCTCTGGTCCGACACCGCCGACAAATTCTCCGACGAGGACGTCTCTGAGGCCATACAGGGGCTGGTCTTGAAGTTGGATCAGGCGCTGGAACAGCAGAGTTGGGATTTGCAGAGATTGGCGTTGGCTAATAGAGATTTGGAGAAGAAGATTAAGGTGAAGAAGACTGCGACGATGAATCAAGGTTTTGAGGAGAAGACGACGGCGGTGGCGGCGGGGACTGTGCATAAAGTGGGTAAGTTCAATGGGTGTGAGATTCAATTGGGGCTGAGGCAGATTTTTGTGGGGTTGACGAGGTTTTGTGGGGACTCCATTACAGCTTACGAGGAGCTCTGTTGTTCAGCCATAGCCGGGGGGAAACAAGAACCGAGTTAG 1752 48.06 MGCASSKLDNLPAVALCRDRCKFLDQALSFTHSLIDSHSAYADSLNKVASALRRLFDQDGESGGGDLKCPPPPTAAPKMERSDSDSDSDSDSGSDSDSEEEEDGCFNQRKPQSPPVGSFMFSNYDSARGQPPPPPPTGSSWDFFNFFETYERYEQPIFNWDREGADQKLQTTRVVAKKKKKKPAVVVDSKKNEEAEKANQPEKKIDDPKMGVLDLMGEIKGSFEKASESSNSISKLLSYGQRMSFCKDTRTGSRGLLSTLKKLCVWEQKLYLEVKAEERLRMILEKKCRQLKNLVEKKSDALKIDSLRNSIRNLSIKLKISIQVVDRISITISKLRDEEFLAEMNELIHGLQSMWKAMSESHKQQTQALTDSKPFESILNGALDDAHLEAAMDLKLELENWRSNFIDLIATQKDCIKALNGWLLRCLLYEPEPEETPNGGCPPPFSPARIGAPPVFVIGHLWSDTADKFSDEDVSEAIQGLVLKLDQALEQQSWDLQRLALANRDLEKKIKVKKTATMNQGFEEKTTAVAAGTVHKVGKFNGCEIQLGLRQIFVGLTRFCGDSITAYEELCCSAIAGGKQEPS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16390258 16392509 + Lsi08G008020.1 Lsi08g00802 668728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00802 583 MobiDBLite consensus disorder prediction 111 125 - -
Lsi08g00802 583 Coils Coil 489 516 - -
Lsi08g00802 583 MobiDBLite consensus disorder prediction 57 141 - -
Lsi08g00802 583 Pfam Protein of unknown function (DUF632) 248 484 IPR006867 -
Lsi08g00802 583 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
Lsi08g00802 583 Coils Coil 274 301 - -
Lsi08g00802 583 PANTHER F5M15.15 246 575 - -
Lsi08g00802 583 MobiDBLite consensus disorder prediction 186 208 - -
Lsi08g00802 583 MobiDBLite consensus disorder prediction 183 208 - -
Lsi08g00802 583 PANTHER UNCHARACTERIZED 246 575 - -
Lsi08g00802 583 PANTHER F5M15.15 1 247 - -
Lsi08g00802 583 PANTHER UNCHARACTERIZED 1 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00802 - - - csv:101213768 989.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00802 Lsi-Chr8:16390258 Lsi11g01274 Lsi-Chr11:21307960 1.12E-13 dispersed
Lsi08g00802 Lsi-Chr8:16390258 Lsi02g02785 Lsi-Chr2:34100079 4.91E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g121 . . . . . . . . Cmo05g01009 . . . . . Sed11g0843 . . Bhi04g01560 Tan02g1536 Cmetu03g1244 . Hepe08g1485 . Lcy13g2249 Cla08g00962 . . . . . . . . Cone17ag1442 Cone20ag0035 . . . Cme03g01356 . . . . . . . . . . . . Cma05g00991 Car05g00873 . Cpe11g00800 . . . . . . . . . . . . . . . Lsi08g00802 . Chy03g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012946 0 1 0 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00802 Lsi_Chr08 FPKM 1.95308 2.245316 3.508423 3.699689 2.934802 3.690319 3.623622 2.878423 2.288276 2.006899