Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00803 ATGGGCTGCTGTGGATCGTCCTTACAGAGGGCTCACAGTCTAGGACTAGGAGCTGGCAAAAGCAACCATATCCCTCACCCTCAAAACAATTTCCAATCTCATCCTTCTAATGGCCCTTCTGATCCCGCCTCCGTTACCGGTGGCGTCCCTGCTTTCTCCGAGTTCTCCTTCGCCGACCTCAAGGCCGCTACCAACAACTTCAGCTCCGATTACATCGTTTCCGAGGGCGGCGAGAAAGCCCCCAATGTCGTTTACAAAGGCCGCCTTCAGAACCAGAACAATCGCCGTTGGATCGCCGTCAAGAAGTTTACTAAGTTGGCTTGGCCCGACCCCAAGCAGTTCGTTGAGGAAGCATCTGGGGTCGGTAAATTGAGGCATAAAAAACTGGCGAATCTCATTGGGTATTGCTGTGAAGGCGATGAGAGGCTTCTTATTGCGGAGTATATGCCCAATGACACCCTCGCGAAGCATCTCTTTCACTGGGAGAATCAGACCATTGAGTGGGCTATGAGATTAAGAGTGGCTTTATATATTGCTGAAGCATTAGACTATTGTAGCTCTCAGGAACGTCCATTGTACCATGACTTGAATGCTTATAGAGTTCTATTTGATGAGAATGGTGACCCTCGACTTTCTTGTTTTGGATTGATGAAAAACAGCAGGGATGGTAAAAGTTATAGTACCAATCTTGCGTATACTCCACCTGAATATTTAAGAAATGGAAGAGTGACTGCAGAAAGTGTCATCTTTAGCTTTGGAACTGTCCTCTTAGATCTACTGAGTGGCAAGCACATCCCTCCTAGTCATGCACTTGATATGATTCGAGGCAAAAACATTCTTCTCTTAATGGATTCACACTTGGAGGGTAACTTTTCAACTGGAGAGGCAACTGTGGTTTTTGATCTTGCATCACGATGCTTACAATATGAACCTCGAGATCGACCAAATACTAAGGACCTTGTTGCAACCCTTGCCCCCTTACAGAATAAACCTGATGTTCCATCTTATGTAATGCTAGGAATTCCAAAGCATGAGGAAGCACCTCCAACTCCACAACATCCTCTCACTCCAATGGGTGATGCTTGTGCAAGGATGGATCTCACTGCTATCCATCAAATTTTGGTAATGACACACTACAAAGACGACGAATTAACAAATGAGCTGTCTTTCCAAGAATGGACTCAACAAATGAGAGACATGTTGGAAGCAAGGAAGCGTGGGGACTTGGCATTTCGTGACAAAGATTTTAAAACAGCAATTGACTGTTATTCTCAGTTCATAGATGTTGGCACCATGGTTTCTCCCACTGTTTATGCACGAAGGAGTCTTTGTTATCTTCTTTGCGACCAACCGGACGCTGCTCTTCGAGACGCCATGCAAGCCCAATGTGTTTACCCCGATTGGTCCACATCTTTTTACATGCAGGCCGTTGCGCTTGCCAAGCTAGATATGCACAAGGACGCGGCTGACATGCTAAATGAGGCTGCTGCATTGGAAGAGAAACGGCAAAAAGGCGGACGGGGATCTTGA 1530 46.27 MGCCGSSLQRAHSLGLGAGKSNHIPHPQNNFQSHPSNGPSDPASVTGGVPAFSEFSFADLKAATNNFSSDYIVSEGGEKAPNVVYKGRLQNQNNRRWIAVKKFTKLAWPDPKQFVEEASGVGKLRHKKLANLIGYCCEGDERLLIAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSQERPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTAESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNILLLMDSHLEGNFSTGEATVVFDLASRCLQYEPRDRPNTKDLVATLAPLQNKPDVPSYVMLGIPKHEEAPPTPQHPLTPMGDACARMDLTAIHQILVMTHYKDDELTNELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTAIDCYSQFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPDWSTSFYMQAVALAKLDMHKDAADMLNEAAALEEKRQKGGRGS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16400279 16405545 + Lsi08G008030.1 Lsi08g00803 668729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00803 509 MobiDBLite consensus disorder prediction 15 45 - -
Lsi08g00803 509 SUPERFAMILY Protein kinase-like (PK-like) 47 334 IPR011009 -
Lsi08g00803 509 MobiDBLite consensus disorder prediction 23 43 - -
Lsi08g00803 509 SUPERFAMILY TPR-like 403 500 IPR011990 GO:0005515
Lsi08g00803 509 Pfam Protein tyrosine and serine/threonine kinase 83 324 IPR001245 GO:0004672|GO:0006468
Lsi08g00803 509 Gene3D Transferase(Phosphotransferase) domain 1 150 340 - -
Lsi08g00803 509 Gene3D Phosphorylase Kinase; domain 1 45 148 - -
Lsi08g00803 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 507 IPR045845 GO:0004672|GO:0009742
Lsi08g00803 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 1 507 - -
Lsi08g00803 509 Gene3D Tetratricopeptide repeat domain 398 507 IPR011990 GO:0005515
Lsi08g00803 509 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00803 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - csv:101213531 1018.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01794 Lsi08g00803 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01794 Lsi-Chr4:25163703 Lsi08g00803 Lsi-Chr8:16400279 0 dispersed
Lsi05g01912 Lsi-Chr5:26332519 Lsi08g00803 Lsi-Chr8:16400279 0 dispersed
Lsi08g00803 Lsi-Chr8:16400279 Lsi10g00824 Lsi-Chr10:11440193 0 dispersed
Lsi08g00803 Lsi-Chr8:16400279 Lsi02g01628 Lsi-Chr2:22167212 9.51E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g122 . Blo12g00863 . Bda03g00310 Bpe02g00322 Bpe04g00271 Bma04g00277 Bma01g02396 Cmo05g01010 Cmo12g00606 Cma01g02004 Cma09g00065 Car01g01574 Car12g00648 . Cpe06g00032 Cpe07g00582 Bhi04g01558 . . . . . Lcy13g2248 Cla08g00963 . . . . . . Cone4ag2009 Cone7ag1925 Cone17ag1441 Cone20ag0036 Lsi04g01794 Csa04g02688 . Cme03g01357 . . Bda11g00958 . . . . . . Cmo01g02063 Cmo09g00065 Cma12g00667 Cma05g00992 Car05g00874 Car09g00057 Cpe11g00801 Cpe02g00044 Bhi09g02923 . . . . Mch11g0067 . Cla05g01573 Cam05g1682 . Cco05g1732 . . . Lsi08g00803 . Chy07g00379 Cme07g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000526 3 6 2 3 3 3 6 3 3 3 3 3 6 3 3 6 3 5 6 3 3 3 3 3 2 3 3 6 5 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83844 PF07714 PK_Tyr_Ser-Thr 3.40E-28 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00803 Lsi_Chr08 FPKM 1.820261 3.059484 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0