Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00804 ATGGGTGATGATGATGATGGGGAGAAGAAACACAAACAACCCCTTAACTCAAGGTTTAAAAGGGTTTGTGTTTTTTGTGGGAGTAGCCCTGGCAAGAGAAATTGCTACCGTGAAGCCGCCGTCGAACTCGCCAGAGAATTGGTTTCAAGGAGATTGGATCTTGTTTATGGAGGAGGAAGTATTGGCTTAATGGGGCTTGTCTCTCAAGAGGTTCATAATGGAGGTGGACATGTAATAGGAATTATCCCAAAAACCTTGATGCGTAAAGAGATTACTGGGGAAACAGTTGGGGAAGTCCGACCAGTAGCCGACATGCATCAGAGGAAAGCGGAGATGGCCCGCCATTCTGACTGTTTCATTGCTCTCCCAGGTGGATATGGAACATTGGAAGAGCTCCTGGAAGTCATAACCTGGGCCCAGCTCGGCATCCATGACAAGCCCGTGGGTTTGCTTAATGTTCATGGTTATTACAATTCGCTTCTCTCCTTCATTGACAAGGCTATAGATGACGGCTTCATCATGCCGTCTCAACGTAGTATCATCGTCTCTGCCCCCAACGCTAAGGAGCTTGTTCAGAAGCTCGAGAATTATCAGGAATACGTGCCAGTTCACGACGGCGTGGTGGCAAAGGCCAAGTGGGAAGCCGAACAAATGGAGCTAAACGCCACTTTGCAGACAGAATTCTACCGATGA 693 48.05 MGDDDDGEKKHKQPLNSRFKRVCVFCGSSPGKRNCYREAAVELARELVSRRLDLVYGGGSIGLMGLVSQEVHNGGGHVIGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVHGYYNSLLSFIDKAIDDGFIMPSQRSIIVSAPNAKELVQKLENYQEYVPVHDGVVAKAKWEAEQMELNATLQTEFYR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16414661 16416930 - Lsi08G008040.1 Lsi08g00804 668730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00804 230 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 13 228 - -
Lsi08g00804 230 PANTHER LOG FAMILY PROTEIN YJL055W 13 228 - -
Lsi08g00804 230 Pfam Possible lysine decarboxylase 64 194 IPR031100 -
Lsi08g00804 230 SUPERFAMILY MCP/YpsA-like 18 197 - -
Lsi08g00804 230 TIGRFAM TIGR00730: TIGR00730 family protein 20 197 IPR005269 GO:0009691|GO:0016787
Lsi08g00804 230 Gene3D - 8 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00804 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101207180 420.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00804 Lsi-Chr8:16414661 Lsi11g01259 Lsi-Chr11:21228404 1.06E-127 dispersed
Lsi08g00804 Lsi-Chr8:16414661 Lsi10g01260 Lsi-Chr10:16851925 2.04E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g124 . . . . . . . . Cmo05g01011 . . . . . . . . Bhi04g01557 . . . . . . Cla08g00964 . . . . . . . . . . . . . Cme03g01358 Blo17g00713 . Bda08g01175 . . . . . . . . . Cma05g00993 Car05g00875 . . . . . . . . . . . . . . . . . Lsi08g00804 . Chy03g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00804 Lsi_Chr08 FPKM 31.592833 34.696171 54.277481 56.663052 39.395229 37.334656 36.596619 16.903418 15.895083 15.101682