Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00811 ATGTTTGAGGTTGAGAGTGTAGGAAGCGATGTGAATGAAGTAAAGGAAGGAGATATTGTGATTCCAACATTCATAGCAGAGTGTGGAGAATGTAGAGATTGCAAGTCAGAAAAAAGCAATCTTTGCTCAAAAATACCATTCAGTTTCTCTCATGGAATGCCTCGATGTGGAACAAGTAGATTCACTGACCTTAATGGACAAATATTGCATCATTTGATGTTTGTTTCAAGTTTCACTGAATACACTGTGGTGGATGTTGCTCATCTTGTTAAACTTGATCCTAATCTCATCCCTCCAAGCCAGGCCTGCCTTCTTAGTTGTGGTGTATCAACAGGGGTGGGTGGTGCTTGGAGAACAGCAAATGTGGAAAAGGGATCTACTGTTGCCATTTTTGGATTGGGAACTATAGGATTAGCTATTGCTCAAGGAGCAAGAATATGTGGAGCAGCTAGGATTATTGGGGTAGATGTGATTAATGAGATGACTGATGGAGGTGCAGACTATTGCTTTGAATGTGTTGGACTAAATTCCCTAACCAAGGAAGCATATGCAAGCTGCAGAAAGGGTTGGGGGAAAACAATTTTATTTGGTGCGGAGAACCCAGCATCATCACTGTTGGGTATCAAATGTATGGATCTCATTTGCCAAGGGACAATGATTATAGGATCCTTATATGGTGGACTTAAGCCCAAATCACATATTCCCACACTCATTCAATGGTACATACTTAATAAACTACAATTGGATTTATTTATCTCACATGAAATTGGGTTTGAAGACATCAACAAAGCTTTCAATTTGCTAAGTGAAGGCCAATGCCTCAGAACACTGCAAATGCATGAGAAGCCCCAGTGA 855 40.47 MFEVESVGSDVNEVKEGDIVIPTFIAECGECRDCKSEKSNLCSKIPFSFSHGMPRCGTSRFTDLNGQILHHLMFVSSFTEYTVVDVAHLVKLDPNLIPPSQACLLSCGVSTGVGGAWRTANVEKGSTVAIFGLGTIGLAIAQGARICGAARIIGVDVINEMTDGGADYCFECVGLNSLTKEAYASCRKGWGKTILFGAENPASSLLGIKCMDLICQGTMIIGSLYGGLKPKSHIPTLIQWYILNKLQLDLFISHEIGFEDINKAFNLLSEGQCLRTLQMHEKPQ 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16461329 16466166 - Lsi08G008110.1 Lsi08g00811 668737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00811 284 PANTHER ALCOHOL DEHYDROGENASE 4 157 - -
Lsi08g00811 284 PANTHER ALCOHOL DEHYDROGENASE 156 277 - -
Lsi08g00811 284 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 97 242 IPR036291 -
Lsi08g00811 284 Gene3D - 158 223 - -
Lsi08g00811 284 Gene3D - 112 157 - -
Lsi08g00811 284 Pfam Zinc-binding dehydrogenase 157 240 IPR013149 -
Lsi08g00811 284 Gene3D - 224 275 - -
Lsi08g00811 284 Gene3D - 3 111 - -
Lsi08g00811 284 SUPERFAMILY GroES-like 4 131 IPR011032 -
Lsi08g00811 284 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 4 157 - -
Lsi08g00811 284 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 156 277 - -
Lsi08g00811 284 SUPERFAMILY GroES-like 231 277 IPR011032 -
Lsi08g00811 284 Pfam Alcohol dehydrogenase GroES-like domain 3 92 IPR013154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00811 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101212881 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00811 Lsi-Chr8:16461329 Lsi08g00816 Lsi-Chr8:16498699 2.20E-139 dispersed
Lsi08g00811 Lsi-Chr8:16461329 Lsi08g00813 Lsi-Chr8:16484101 5.44E-30 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g133 Blo01g01352 . . . . . . . Cmo05g01015 . . . . . . . . Bhi04g01548 Tan02g1549 . . Hepe08g1467 . . . . . . . . . . . . Cone20ag0045 . . . Cme03g01364 . . . . . . . . . . . . Cma05g00997 Car05g00879 . Cpe11g00806 . . . . . . . . . . . . . . . Lsi08g00811 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00811 Lsi_Chr08 FPKM 8.506067 9.566254 24.296225 25.915535 26.48036 24.8631 24.311909 39.535221 41.806339 36.800247