Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00814 ATGTCAAAAAAGTTTGGAGTTACTGAGTTTGTGAATTCTGGAAGCCTTGGCAATAAATCTGTAAGCGAGGTGATTAATGAAATGACTGATGGGGGTGCAGACTATTGTTTTGAATGTGTTGGATTGCCTTCCTTAGTTCATGAAGCATATGCATGTTGTAGACAGGGTTGGGGAAAAACAATCGTGTTAGGTGTGCACAAACCAGGATCACATTTGAGTTTTGACTCATTGGATGTCCTTCATCATGGAAAGACTCTAATAGGATCATTGTTTGGAGGATTAAAGACGAAATCAGATATTCCTACTCTTCTTAAATGGTATACAGATAAGAAACTTGAGCTGGATAAATTTGTGACACACGAAATGGATTTTGAAGACATCAATAAAGCTTTCAATTTGCTAATTGAAGGAAAGTGCTTGAGATGTGTGATGTGGATGAACAATTCAGCAACAACAAACAAACCCTCCTCATGA 474 37.55 MSKKFGVTEFVNSGSLGNKSVSEVINEMTDGGADYCFECVGLPSLVHEAYACCRQGWGKTIVLGVHKPGSHLSFDSLDVLHHGKTLIGSLFGGLKTKSDIPTLLKWYTDKKLELDKFVTHEMDFEDINKAFNLLIEGKCLRCVMWMNNSATTNKPSS 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16492986 16494456 - Lsi08G008140.1 Lsi08g00814 668740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00814 157 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 110 IPR036291 -
Lsi08g00814 157 Gene3D - 90 141 - -
Lsi08g00814 157 Gene3D - 2 89 - -
Lsi08g00814 157 Pfam Zinc-binding dehydrogenase 3 108 IPR013149 -
Lsi08g00814 157 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 2 145 - -
Lsi08g00814 157 SUPERFAMILY GroES-like 96 145 IPR011032 -
Lsi08g00814 157 PANTHER ALCOHOL DEHYDROGENASE 2 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00814 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101211996 251.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00814 Lsi-Chr8:16492986 Lsi08g00816 Lsi-Chr8:16498699 4.37E-85 dispersed
Lsi08g00813 Lsi-Chr8:16484101 Lsi08g00814 Lsi-Chr8:16492986 3.24E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023601 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00814 Lsi_Chr08 FPKM 13.269572 14.998141 10.62197 10.058246 14.500701 11.280411 12.833091 14.378951 15.097598 14.730728