Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00821 ATGGCTGCTGCAGCTGTTACCACCGCCGAGCAAAGCCACCGCCACCGATCAGTGTCCAAAGTGGGCATAATTGGGGCCGGCATTAGCGGAATCGCCGCCGCTAAGCATCTCTCTAGTCACCACCCAATGGTTTTTGAGGCGACGGATTCTATAGGCGGCGTGTGGAAGCACTGCGCTTATCGGACCACCCGGCTGCAGACGCCTCGCCGGGATTTTGAATTCTCCGACTATCCGTGGCCGCCACAGACGACGGGGAATGATGATGACTTTCCCACGTATTTGGAGGTGTTGGATTATTTGCATGGCTATGCAACGCATTTTGATGTGCTCAAGTTCGTCAAGTTTAACTGTAAAGTGGTCCAACTCCGTTACATTGGCGGCCCGGAAGCTGAAGATTCCACGGCGGCCGGAGTGTATGGAAGCCTACTTAATGGCCGTCCTGTTTGGGAAGTCGCCGTTGAAGACACTCAGCTCAACACCATTCAGTGGTATGAATTCGAGTTGGTGGTGATATGTGTGGGAAGATATGGAGACATACCAAATATACCAAAATTTCCTCACAACAAAGGTCAAGAGGTTTTCAAAGGCAAGGTTTTACACTCAATGGACTATGCTAAGCTTGACCATGATGCTGCACGTGCCTTACTTCAGCACAAGCGTGTGGTCGTTGTTGGCTATCGAAAATCTGCTATTGATTTGGCTATTGAATGTGCCGAAGCAAATCAAGGACCAGAAGGGCAGCCCTGCACAATGAGAAAGGTAATTTCTAAGTTCATAGAGTCATATTTAACATGGAAGTTGCCATTAAAGAAGTATGGGCTAAAACCAGAGCATCCTTTTGAAGAGGATTATGCATCCTGTCAAATGGCTATTATGCCAAAGAATTTCTTTGAGGAAGCAGATAAAGGAAAGATTCTGTTTAAAAAGACATCTAAATGGTGGTTTTGGAATGGTGGAGTTGAATTTGAAGATAACACAAAATTAGAAGCTGATGTTGTCATTTTCAACACTGGTTTTCAAGGCAAACAAAAGCTTCAATCTTTGTTGCCTCATCCTTTCAATACCCTTTTGGTTGATTCCTTTGGTATCATCCCTTTGGGCGTGATTCATCCACTGATACCAAACATAGCATTTGTGGGATATCTTGAGAGTGTATCAAACCTTCGCACTGGAGAGCTACGTTGCAAATGGCTAGCAAGATTGGCTGAAGATGCCTTCAAACTTCCTACCATTCACAAAATGCTTCAACAAATTGCAAATGAAATCCAAGTTATGAAGAACACAACACGTTTTTACAAGCGTCAATGTGTTTCCACCTTCAGCCTTAGCTACACTCGTGAAATTTCTCAAGAGATGGAAACTACTTTAAAACTAAAT 1377 44.52 MAAAAVTTAEQSHRHRSVSKVGIIGAGISGIAAAKHLSSHHPMVFEATDSIGGVWKHCAYRTTRLQTPRRDFEFSDYPWPPQTTGNDDDFPTYLEVLDYLHGYATHFDVLKFVKFNCKVVQLRYIGGPEAEDSTAAGVYGSLLNGRPVWEVAVEDTQLNTIQWYEFELVVICVGRYGDIPNIPKFPHNKGQEVFKGKVLHSMDYAKLDHDAARALLQHKRVVVVGYRKSAIDLAIECAEANQGPEGQPCTMRKVISKFIESYLTWKLPLKKYGLKPEHPFEEDYASCQMAIMPKNFFEEADKGKILFKKTSKWWFWNGGVEFEDNTKLEADVVIFNTGFQGKQKLQSLLPHPFNTLLVDSFGIIPLGVIHPLIPNIAFVGYLESVSNLRTGELRCKWLARLAEDAFKLPTIHKMLQQIANEIQVMKNTTRFYKRQCVSTFSLSYTREISQEMETTLKLN 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16583318 16588247 - Lsi08G008210.1 Lsi08g00821 668747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00821 459 SUPERFAMILY FAD/NAD(P)-binding domain 304 439 IPR036188 -
Lsi08g00821 459 PIRSF FMO 17 243 IPR000960 GO:0050660|GO:0050661
Lsi08g00821 459 PIRSF FMO 248 459 IPR000960 GO:0050660|GO:0050661
Lsi08g00821 459 SUPERFAMILY FAD/NAD(P)-binding domain 20 243 IPR036188 -
Lsi08g00821 459 Pfam Flavin-binding monooxygenase-like 258 454 IPR020946 GO:0004499|GO:0050660|GO:0050661
Lsi08g00821 459 Pfam Flavin-binding monooxygenase-like 20 239 IPR020946 GO:0004499|GO:0050660|GO:0050661
Lsi08g00821 459 PANTHER DIMETHYLANILINE MONOOXYGENASE 251 453 - -
Lsi08g00821 459 Gene3D - 14 392 IPR036188 -
Lsi08g00821 459 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 251 453 - -
Lsi08g00821 459 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 10 250 - -
Lsi08g00821 459 PANTHER DIMETHYLANILINE MONOOXYGENASE 10 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00821 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - csv:101205746 748.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00365 Lsi-Chr6:4024307 Lsi08g00821 Lsi-Chr8:16583318 9.79E-88 dispersed
Lsi06g00368 Lsi-Chr6:4044978 Lsi08g00821 Lsi-Chr8:16583318 2.30E-135 dispersed
Lsi08g00821 Lsi-Chr8:16583318 Lsi10g00842 Lsi-Chr10:12047422 5.64E-107 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g187 . . . . . Bpe02g00314 . . . . . . . . . . . Bhi04g01538 Tan02g1562 Cmetu03g0531 . Hepe08g1457 . Lcy13g2236 . . . . . . . Cone4ag1711 Cone7ag1629 . . . . . . Blo17g00265 . . . Bpe14g00290 . . Bma02g00330 . . . . . . . . . . . . . . . . Cla08g00973 Cam08g1422 Cec08g1001 Cco08g1124 Clacu08g1126 . Cre08g0910 Lsi08g00821 . Chy03g00644 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002096 2 2 3 2 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00821 Lsi_Chr08 FPKM 11.068289 12.001602 10.616922 11.495784 19.368736 17.563978 19.915598 22.605757 22.938995 22.05941