Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00823 ATGAACAATAATCCCGATCTCCTCCAAACTTCCGCCGCCGGCGACACCAAGTACAGAGGAGTACGGCGGCGCAAATGGGGGAAATGGGTTGCTGAAATCCGTCTCCCTAATAGCCGCGACCGTATCTGGCTTGGTTCTTACGACTCACCAGAGAAAGCTGCCCGAGCCTTTGACGCTGCCCTTTTCTGTCTCCGTGGACCTCATGCCAAGTTTAACTTCCCTGACCAACCACTGCCCGACATTCTCAACGCTCATTCTCTCACTGCCCATCAGATCCAAGAATTGGCTGCGAAGTTCGCTAATGAATATCATCAAAACGACGACGTTGTGGTTGAGGGTATTGTAGTACCTCCAAATCCACCCACTGAGGACAATTGTGGAAATTCACCTTCCTCCTCCTCCAACAATATTAATAATTATAACAATATGGATTGGTCTTTCCTTGATGCCATTCATGAAGACCTTCCTCATTCTTCTTCTTCTTCCTCCAATTTCTTTCCTCTTTACAATGACCATTTTGATAATATCTTAACCAATGATTTTTATCAATCCACCAACAACAACGACCTTTACGACGTCGTTTCGGGTGATGACATTGACGACACTTTCTCCAATCAACCCTTTCTATGGAATTTTTAA 639 45.23 MNNNPDLLQTSAAGDTKYRGVRRRKWGKWVAEIRLPNSRDRIWLGSYDSPEKAARAFDAALFCLRGPHAKFNFPDQPLPDILNAHSLTAHQIQELAAKFANEYHQNDDVVVEGIVVPPNPPTEDNCGNSPSSSSNNINNYNNMDWSFLDAIHEDLPHSSSSSSNFFPLYNDHFDNILTNDFYQSTNNNDLYDVVSGDDIDDTFSNQPFLWNF 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16615372 16616010 + Lsi08G008230.1 Lsi08g00823 668749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00823 212 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Lsi08g00823 212 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Lsi08g00823 212 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Lsi08g00823 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 10 212 - -
Lsi08g00823 212 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Lsi08g00823 212 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Lsi08g00823 212 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Lsi08g00823 212 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Lsi08g00823 212 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Lsi08g00823 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00823 - - - csv:101205513 337.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01372 Lsi08g00823 CCT
Lsi04g01372 Lsi08g00823 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00359 Lsi-Chr6:3917885 Lsi08g00823 Lsi-Chr8:16615372 1.66E-42 dispersed
Lsi08g00823 Lsi-Chr8:16615372 Lsi08g01490 Lsi-Chr8:23067211 9.49E-28 dispersed
Lsi10g00522 Lsi-Chr10:7432528 Lsi08g00823 Lsi-Chr8:16615372 2.96E-26 dispersed
Lsi04g01372 Lsi-Chr4:21523641 Lsi08g00823 Lsi-Chr8:16615372 1.13E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g185 . Blo12g01035 . Bda03g00119 . . . . . . Cma01g01691 . Car09g00328 . Sed11g0856 . . Bhi04g01537 Tan02g1566 Cmetu03g1197 . Hepe08g1454 . Lcy13g2235 Cla05g01643 Cam05g1753 Cec05g1762 Cco05g1818 Clacu05g1744 Cmu05g1629 Cre05g1758 . . Cone17ag0957 Cone20ag0301 Lsi04g01372 . . . . . . . . Bpe04g00104 . . Sed13g1932 . Cmo09g00380 Cma09g00378 . Car01g01306 Car05g00886 . Cpe02g00301 Bhi09g03062 Tan01g3504 Cmetu07g1108 . Hepe01g1929 Mch11g0466 . Cla08g00976 Cam08g1424 Cec08g1002 Cco08g1125 Clacu08g1130 . Cre08g0912 Lsi08g00823 . Chy03g00645 Cme07g00162
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002244 2 2 0 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25764 PF00847 AP2 1.30E-14 CL0081 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00823 Lsi_Chr08 FPKM 29.739902 33.035015 23.664835 23.173939 10.607695 10.635957 11.57569 18.045383 17.643667 18.737146