Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00824 ATGAATCCACTGGCGGATCCTCCGGTGAAGATTGATTCGCAAGTCGACGCCGGCGGCGTCATCAGCCAGAAAAATTCTTTAATCCAAAATTTGATTACCTTCCCTCTCAGCTCTACTGTACCTACGTCAAGCGAACAGCTGAATATGGGGAGCGAGGAGAAATGGTGTGTGGTTACCGGAGGAAGAGGCTTCGCCGCACGACATCTCGTTGAAATGCTGATCAAATACAACATGTTTTCCGTTCGAATTGTTGACTTAGGCTCCTCCATTGAATTGGAAGCAAGCGAGGAGCAAGGGATTCTCGGAGAGGCATTGCGTTCCGGTCGTGCTCAGTACGTTTCAGCCGATCTTCGGGACAAAGCTCAAGTGCTCAAAGCGTTTGAAGGAGCGGAGGTTGTTTTTCACATGGCTGCTCCGAATTCATCCATTAACGATTACAAACTTCATTATTCGGTCAACGTTGAAGGAGCCAAGAATGTAATTGACGCTTGTGTCGAGCAAAATGTAAAGCGACTAATATATACTAGTTCGGCCAGTGTAGTATTTGATGGGATAAATGGACTTATTAATGCGGATGAGACAATGCCATATGCATCGAAGCACAATGATTTCTACTCTGCGACTAAAGCTGAGGGGGAAGCTTTGGTTCTCAAGGCAAATGGCTCAAATGGACTTCTAACATGCAGCCTAAGGCCCAGTGGCATCTTTGGCCCTGGTGATAGGTTACTGTTCATCATTGGTAATGGCAATAATGCCTATGACTTTACTTATGTTGAAAATGTGGGACATGCCCATGTATGTGCTGAACGAGCTCTAGCTTCAGGAGGAATAATTGCAGAGAAAGCTGCAGGGCAGGCTTATTTCATAACCAACATGGAACCCATCAAGTTTTGGGAGTTTGTCTCACTTATTCTGGATGGTCTTGGCTATGAAAGGCCAAGAATAAAGATCCCTGCCTGCATAGTGATGCCGATTGCACATATGGTGAACTGGACTTATAAGCTTTTAGGTCCTTATGGAATGCCTGTCCCACAGTTTACACCTTCCCCTGCTGACATTTTACTCTGGAAGGATAAAAGGAAGACATTGATAGCATTGCTAGTTTTGGCGGCTATTTATTATAACTTCATTGCTCCCGAGTGTACCATGATCACTGCACTGTCAAAGCTTCTCTTGGTGGCATTGACATTTCTATTTATTCATGGGAGTTTACCAGAGAAAATATATGGATATCGAGTTGAGAAAATTTCCTCGTCGTGTTTTTCCTTGTCAGAAGAGAGGTCACGAAGCATTGCCATCACTGTAACATCATTTTGGAATTCTTTCGTTAGAAATTTTAAATCTCTTTCCAGAGGAAATGAATGGGTGCTCTTGCTTAAGGTTGCTGTATCACTGTTGGCTCTTAGCTTTATTGGAGTGGTTTCTCTTCAAACTTTATATAAGACAGTGGTTCTATTTGCATTCACGGGTTTCTTCGTATACGAGAAAAAGGAGCAAGAGATTGATTCTGTGTGTCTAAGATTTCAAGTTTGGACGCGAAGCAAACGCAATGTGGTCGGAAAAGTTTCAACATCAAAAGAATAA 1584 43.18 MNPLADPPVKIDSQVDAGGVISQKNSLIQNLITFPLSSTVPTSSEQLNMGSEEKWCVVTGGRGFAARHLVEMLIKYNMFSVRIVDLGSSIELEASEEQGILGEALRSGRAQYVSADLRDKAQVLKAFEGAEVVFHMAAPNSSINDYKLHYSVNVEGAKNVIDACVEQNVKRLIYTSSASVVFDGINGLINADETMPYASKHNDFYSATKAEGEALVLKANGSNGLLTCSLRPSGIFGPGDRLLFIIGNGNNAYDFTYVENVGHAHVCAERALASGGIIAEKAAGQAYFITNMEPIKFWEFVSLILDGLGYERPRIKIPACIVMPIAHMVNWTYKLLGPYGMPVPQFTPSPADILLWKDKRKTLIALLVLAAIYYNFIAPECTMITALSKLLLVALTFLFIHGSLPEKIYGYRVEKISSSCFSLSEERSRSIAITVTSFWNSFVRNFKSLSRGNEWVLLLKVAVSLLALSFIGVVSLQTLYKTVVLFAFTGFFVYEKKEQEIDSVCLRFQVWTRSKRNVVGKVSTSKE 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16623892 16637564 + Lsi08G008240.1 Lsi08g00824 668750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00824 527 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 51 341 - -
Lsi08g00824 527 Pfam Reticulon 351 504 IPR003388 -
Lsi08g00824 527 Gene3D - 43 357 - -
Lsi08g00824 527 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 57 317 IPR002225 GO:0003854|GO:0006694|GO:0016616
Lsi08g00824 527 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 319 IPR036291 -
Lsi08g00824 527 ProSiteProfiles Reticulon domain profile. 350 527 IPR003388 -
Lsi08g00824 527 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 51 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00824 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - csv:101205275 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02420 Lsi-Chr4:31316394 Lsi08g00824 Lsi-Chr8:16623892 9.85E-32 dispersed
Lsi05g01343 Lsi-Chr5:21292540 Lsi08g00824 Lsi-Chr8:16623892 1.54E-95 dispersed
Lsi08g00824 Lsi-Chr8:16623892 Lsi08g01119 Lsi-Chr8:19835148 4.07E-11 dispersed
Lsi08g00824 Lsi-Chr8:16623892 Lsi03g01266 Lsi-Chr3:23357447 5.88E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g182 . . . . . . Bma04g00296 . . . . . . . . . . Bhi04g01534 Tan02g1571 . . Hepe08g1449 . Lcy13g2234 . . . . . . . . . Cone17ag0956 Cone20ag0300 . . . . Blo17g00268 . . Bda13g01581 Bpe14g00288 . . Bma02g00332 . . . . . . Car05g00887 . . . . . . . . . Cla08g00977 Cam08g1426 Cec08g1004 Cco08g1126 Clacu08g1131 . Cre08g0914 Lsi08g00824 . Chy03g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008574 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00824 Lsi_Chr08 FPKM 52.550446 58.324772 2.962483 3.606163 1.048845 0.851906 0.980002 0.0 0.0 0.0