Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00826 ATGCATGAACCTGAGGAGGAAAACCGTGATGGTGCTCGCAAGAGAAGATTCAGTGACCTGGAGCCCAGTGTTGCTTCTCATCAGTCCAATTTCAACCAACCCATGGACGAGGGCTTCATTCCTAGAAGGTATCAAATGGAGGTTTTTGAAGTAGGGATGAGGAGGAACACCATAGCCGTGTTGGAAACAGGTTCTGGAAAGACCATTGTCGCAGTGATGCTTATAAAAGAAATTGGAAAAGCTATGAAGTCCAGCGGCGATAAGAAGTTCATCATTTTCTTGGCTCCGACTGTTCATTTGCAATACAACGTTATTAAAGTTCATACTGATTTTGAAGTGGCGGAGTATTATGGTGCCATGGGGGTCGATGATTGGAATATGAACTGCTGGGACAAGGAAACAAGCGAACGCGATGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTGAGGAAGGCATATTTTAGACTGGGAACCGTTTGCTTGATGATCATTGATGAATGCCATCGTGCTACTGAAGAAGAATATTTTTCTAACCTTCTTTTGGTGAAGGAATTTTATCACAAATCTGACAACAAACCAAAGATTTTTGGAATGACTGCCTCACCTGTTATTAGAAAAGGTGTTTCCTCTTCCTTCGATTGTGAATGTCAAATTGCAGACCTTGAAAATATCTTGGATTCTCAGATTTATTCTATTGAAGATAAGAAAGAAGTGGAAATATATGTTCCCTCTGCAAAGGAAATTTGCATCTTTTATGAACCAGCTAAGCCTCAAACTGTGGAGTTGAAGGCAAAAATAGAAGCCCTGTGGTCCAAGTTTGATGATTTATTGGCAAACTCACAAGGGGCAATGCAAGGTCATTATAAAGATGTAGACAGTAAGCTTAAGGCACTGAAAAAACGACTGTCCAGTGATCATTTAAAGATCGCTTATTGCCTTGACGAACTTGGTGTTACATGTGCTTATGAGGCCATTAAAGTTTTATTAGAGAATGTCAATGTTCCAAACGAGGAATCTGAGGATCAGTCTACGTCCCTTTTGAGGTGCAAATCTAATTCCGCGTTGGCCATCTCCTTTCAATCTTGTATTGCACTGGTTGACCCAAAATCTTCTGGGTTAAGGGAACCTCCGAGAGGCATTCTTAAGGTATCTAGGCAGGTGCTCTGTCTCATATTTGTTGAAAGAATAATTGCTGCTAATGTCATCGAAAGAATTGTGAAAAAAGTAGCAAATTTATCTCATTTTACAGTTTCACATGTGACGGGATGTAATGCATCAGTTGGTGCACTGGCACCAAAAGTCCAGAAGGAGACATTGGAGTTGTTTTGTCATGGCAAGATCAATCTATTATTTTCCACTGATGTAGTTGAGGAGGGACTTCATGTACCAAATTGCTCATTTGTGGTGCGGTTTGACCTTCCTAAGACTGTTCGTAGTTATGTACAATCTCGAGGTCGTGCTCGACAGAACAACTCCCAATATATTTTGTTGCTGGAGAGGGGAAATCTGAAGCAAAGGGCTCAGCTATTTGATGTCATAAGAAGCAACCGATCAATGACAGATGCAGCTATGAGTAGAGACCCTGATGCATGCATTTTGAAGCCTTTTCCAATTGTGGAGACAGATTGTTACATTGTGGAGGCAACTGGGGCATCGGTTACGGCAGATTCTAGCGTTGGTCTCATATATCAATACTGCAAAAAGCTCCCTGGTGATAAATACTTCAGTCCAAAACCAATCTTTCAACTCTCATATGGTGAAGGATCCTACGAGTGTCAGCTAACTTTACCTCCTACAGCAGCTTTTCAAACCATAGTTGGTCCTTCAACTAGGAATTCTAATTTGTCTAAGCAGCTTGTATGCCTGGAAGCATGTAAGAAGCTACATCAAATGGGTTCACTTAACGACCATCTTCTCCCCTCTATTGAAGAGATATCAGAATTTGACATGGGTCTGAAAAGCAATACATCCACTTCTAGAGCAGGATCAACAAAAAGAAAGGAACTGCACGGCAGAACTGCGATTAGAGCTTTATCTGGAACTTGGGGAGAGCAAGTTGAAGGGGCCACTTTTCAGGCTTATAAATTTGACTTCTCCTGTAGTGTTATGTATGAGCTTTATTCTGGATTTGTTCTTCTGATAGAATCAAAACTTGATGACGATGTGGGAAATTTCGAACTTGAACTTTATCTACTCTCAAAGACGGTTAAGGCTTCTGTGTCTTTTGGTGGGGAGGTTCATTTGGATGCAGAACAGAAAGATACAAAGCCTCTCTGGATTTCATCACACATGTATCTGCTTCTACCAGTGGATTTGCCGGATGATTCAACTCATGATTTATGGAAAATACATTGGAGAGCAATTGATTCCTGTGTTTCTGTGGTTGAGTTTTTGAAGAAAAATTCATCTTTGGATGCTGAAAGAAATTGTGGTGCTGGTGCCATATCAGATTCATCGCCTTCTAGAAACAACTCTGCTGAAACTGGAAGCAATGCTGCAAGTTTAATTCACTTTGCAAATTGTGTTCTAGATGTTCATTCCTTAAAGGACAGGGTGGTATTGGCTATTCATACTGGAAGGATCTACTCAATCGTTGAAGTTGTGAGTAATACATCTGCTGAGAGCCCTTTTGATGGGAACAGTGACAAAGCACCACCTGATTACATTACCTTTGCGGACTATTTCAACAAAAGGTACGGGATTTCACTAAGTTTTCCAAAACAGCCTCTGTTGCGTTTAAAGCAAAGTCATAATCCTCACAATCTACTTGTCAACTTTAAGGATGAAGGTAATACTAGCGACAAGTTGCTATCTGGCCCTGCATTCAGAAAGCCACAAATGCATGTCCATATGCCCCCTGAACTTGTGCTTAGCATGGATGTCCCAAAGGGGGTTTTGAAGTCTTCATACTTGCTACCATCTTTGATGCACCGTTTTGAATCTTTGATGTTAGCCAGCCAGCTTAGGAAGGAGATTAATTATCATTCGAACCTCTGTATATCAAGCTCTTTGATTTTGGAAGCACTTACAACCCTTGGAAGTTGTGAGAATTTTTCCTTAGAGCGGTTGGAATTGCTTGGTGATTCAGTGTTGAAGTATGCTGTGAGCTGCCACCTCTTTCTCAAGTTCCCTGAAAAACATGAAGGGCAGTTATCTTCTAGGCGCCAACAGGTTATCTGTAATGCAACCTTACATGCTTTGGGAACAAAGTGCAGGTTACAGGGATACATACGTGATTCTGCATTTGATCCACGTCGGTGGGTGGCACCAGGACAAGGTACTAATCGTCCTGTTCCTTGTAAATGTGGAGTGGATACAGTAGAAGTTCCTTTGGATGACAAGTTCTGCACTGAAGATCCAAAAGTTGTTTTGGGTAAGTGCTGTGATAAGGGACACAGGTGGGTGGTTTCAAAAACTATAGCCGACTGTGCTGAAGCCCTTATAGGGGCCTATTATGTTGATGGTGGAATCATTGCTGCACTCCATGTGATGAAGTGGCTTGGAATTGATGCTGACCTTGACGTAGCATTAGTTGTTGATGCAATTACTTCTGCATCTCTGAGATCCTGCCCTTTGGAAGATACTGAGATAGCAACCTTAGAGTCAAAAATTGGATATGAGTTTGCTGTCAAAGGATTGTTGCTGGAGGCTATAACACACACATCTGATCAAGAACTTGTGTTAGACTTGCTCATTACTTGGCATTATTATCAGAAGCACTCAGATATTGACCCAGGGGAGTTGACTGATTTACGTTCAGCTTCTGTTAATAATGAAAATTTTGCTCAAGTGGCTGTGAGACGGAATCTTCAGCAACATCTTCAACATTGTTCTGGGCTTCTGATGAGTCAAATTACTGAATATGTGAAGTATTTGTCCGAGTCTCATGATACTGGAAAGCCGTTGCATGGCAATAAAGGCCCCAAGGTTCTTGGTGATATGGTGGAAAGTATTGCAGGGGCCATACTGGTTGACACAAAGCTTAATCTTGACGAAGTGTGGAAAATATATAAGCCACTATTGACTCCATTTGTGACCCCTGATAAACTTGAACTTCCACCACTGCGAGAACTAATTGAATTATGTGATTCTCTTGGGTATTTCATCAAAGATAAATGTACTAGGAAGGGAGAAATTTTTCATGCAGAACTTAGATTACAGTTGCAAGATGCCCTATTGATAGGCGAAGGATATGAACGAACCAGAAAGACCGCAAGAGGGGAAGCTGCTCATCGCTTATTAGTTCAACTTGAGACAAGAGGAATTTCTTACTCCCGTTCTGGCTCTAAGAAGAGAAAACAAAATCCCAGTCACGTTGAGGCTGCTATCGTTCTCCCATCATCTGTCAACTGTTCTACAGAAGCCTGTGATCCCAACTTGGAGACCCCCGTTATTGGACCAATCAACTCAAAGAAAGGAGGACCACGGAGTACTTTGTTTGAACTATGCAAGAAACTGCAGTGGCCAATGCCAACTTTCAATACAGTAGAAAATAAATCAAGGGTCCAAATCGAAATTGGCGAAGGCTCAGAGAAAAGAAAAGGATTTAACAGTTTTTTGTCAAATATTATTTTGCCAATACCCAATGCTGGCTGTATTGAATGTGAAGGTGAAGCTCGAGCCGATAAGAAGAGCTCGCTTGACTCGGCCTCTCTCGTCATGCTTCAGGAACTCCGACAACGAGGAAGAGTCATTATTAACGACTCATGA 4716 41.58 MHEPEEENRDGARKRRFSDLEPSVASHQSNFNQPMDEGFIPRRYQMEVFEVGMRRNTIAVLETGSGKTIVAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLQYNVIKVHTDFEVAEYYGAMGVDDWNMNCWDKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIIDECHRATEEEYFSNLLLVKEFYHKSDNKPKIFGMTASPVIRKGVSSSFDCECQIADLENILDSQIYSIEDKKEVEIYVPSAKEICIFYEPAKPQTVELKAKIEALWSKFDDLLANSQGAMQGHYKDVDSKLKALKKRLSSDHLKIAYCLDELGVTCAYEAIKVLLENVNVPNEESEDQSTSLLRCKSNSALAISFQSCIALVDPKSSGLREPPRGILKVSRQVLCLIFVERIIAANVIERIVKKVANLSHFTVSHVTGCNASVGALAPKVQKETLELFCHGKINLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYILLLERGNLKQRAQLFDVIRSNRSMTDAAMSRDPDACILKPFPIVETDCYIVEATGASVTADSSVGLIYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAAFQTIVGPSTRNSNLSKQLVCLEACKKLHQMGSLNDHLLPSIEEISEFDMGLKSNTSTSRAGSTKRKELHGRTAIRALSGTWGEQVEGATFQAYKFDFSCSVMYELYSGFVLLIESKLDDDVGNFELELYLLSKTVKASVSFGGEVHLDAEQKDTKPLWISSHMYLLLPVDLPDDSTHDLWKIHWRAIDSCVSVVEFLKKNSSLDAERNCGAGAISDSSPSRNNSAETGSNAASLIHFANCVLDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGNSDKAPPDYITFADYFNKRYGISLSFPKQPLLRLKQSHNPHNLLVNFKDEGNTSDKLLSGPAFRKPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLMHRFESLMLASQLRKEINYHSNLCISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCRLQGYIRDSAFDPRRWVAPGQGTNRPVPCKCGVDTVEVPLDDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGIDADLDVALVVDAITSASLRSCPLEDTEIATLESKIGYEFAVKGLLLEAITHTSDQELVLDLLITWHYYQKHSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQITEYVKYLSESHDTGKPLHGNKGPKVLGDMVESIAGAILVDTKLNLDEVWKIYKPLLTPFVTPDKLELPPLRELIELCDSLGYFIKDKCTRKGEIFHAELRLQLQDALLIGEGYERTRKTARGEAAHRLLVQLETRGISYSRSGSKKRKQNPSHVEAAIVLPSSVNCSTEACDPNLETPVIGPINSKKGGPRSTLFELCKKLQWPMPTFNTVENKSRVQIEIGEGSEKRKGFNSFLSNIILPIPNAGCIECEGEARADKKSSLDSASLVMLQELRQRGRVIINDS 1571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16652156 16672360 - Lsi08G008260.1 Lsi08g00826 668752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00826 1571 Pfam DEAD/DEAH box helicase 43 203 IPR011545 GO:0003676|GO:0005524
Lsi08g00826 1571 Pfam Dicer dimerisation domain 560 644 - -
Lsi08g00826 1571 SUPERFAMILY PAZ domain 848 958 IPR036085 GO:0005515
Lsi08g00826 1571 Gene3D - 368 525 IPR027417 -
Lsi08g00826 1571 SUPERFAMILY RNase III domain-like 978 1180 IPR036389 GO:0004525|GO:0006396
Lsi08g00826 1571 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 754 1566 - -
Lsi08g00826 1571 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 28 754 - -
Lsi08g00826 1571 ProSiteProfiles Ribonuclease III family domain profile. 987 1158 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 Gene3D - 37 272 IPR027417 -
Lsi08g00826 1571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 508 IPR027417 -
Lsi08g00826 1571 Gene3D - 1483 1562 - -
Lsi08g00826 1571 ProSiteProfiles PAZ domain profile. 850 962 IPR003100 GO:0005515
Lsi08g00826 1571 MobiDBLite consensus disorder prediction 1 21 - -
Lsi08g00826 1571 Pfam Helicase conserved C-terminal domain 387 489 IPR001650 -
Lsi08g00826 1571 SMART riboneu5 1214 1352 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 SMART riboneu5 1005 1178 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 SMART helicmild6 405 492 IPR001650 -
Lsi08g00826 1571 PANTHER DICER-RELATED 754 1566 - -
Lsi08g00826 1571 PANTHER DICER-RELATED 28 754 - -
Lsi08g00826 1571 SUPERFAMILY RNase III domain-like 1198 1349 IPR036389 GO:0004525|GO:0006396
Lsi08g00826 1571 Gene3D Dicer dimerisation domain 555 651 IPR038248 -
Lsi08g00826 1571 CDD DEXHc_dicer 39 236 - -
Lsi08g00826 1571 Gene3D Ribonuclease III domain 1195 1349 IPR036389 GO:0004525|GO:0006396
Lsi08g00826 1571 Gene3D Ribonuclease III domain 982 1169 IPR036389 GO:0004525|GO:0006396
Lsi08g00826 1571 SMART ultradead3 37 243 IPR014001 -
Lsi08g00826 1571 Pfam Ribonuclease III domain 1229 1328 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 Pfam Ribonuclease III domain 1023 1158 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 531 IPR001650 -
Lsi08g00826 1571 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 560 650 IPR005034 GO:0016891
Lsi08g00826 1571 CDD RIBOc 1215 1350 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 Gene3D paz domain 836 959 - -
Lsi08g00826 1571 CDD RIBOc 1005 1169 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 204 IPR014001 -
Lsi08g00826 1571 Pfam PAZ domain 849 982 IPR003100 GO:0005515
Lsi08g00826 1571 MobiDBLite consensus disorder prediction 1 34 - -
Lsi08g00826 1571 ProSiteProfiles Ribonuclease III family domain profile. 1229 1329 IPR000999 GO:0004525|GO:0006396
Lsi08g00826 1571 SMART PAZ_2_a_3 794 986 IPR003100 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00826 K11592 DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-] - csv:101205038 2780.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02235 Lsi-Chr5:28930371 Lsi08g00826 Lsi-Chr8:16652156 0 dispersed
Lsi06g01046 Lsi-Chr6:20664768 Lsi08g00826 Lsi-Chr8:16652156 0 dispersed
Lsi08g00826 Lsi-Chr8:16652156 Lsi11g01431 Lsi-Chr11:22854898 3.64E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00826 Lsi_Chr08 FPKM 77.414612 88.430801 61.794422 59.615982 45.219471 41.016579 46.099907 37.286526 34.983719 34.551311