Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00830 ATGAGCCTACGCAAGGGCTCTAAGGTTTGGGTGGAAGACAAAGATTTTGCTTGGGTGGCGGCTGAAGTCCTCGACTTCGTTGGCAAACAAGTTCGAGTTTCAACTGTTACTGGAAAGAAGGTGTTGGCTCTTCCTGAGAAGCTTTTGCCGAGGGACGCGGATGAGGATGACCATGGAGGAGTGGATGACATGACGAAGTTGACCTATTTGAATGAGCCTGGCGTGCTTTATAATCTTCAAAGAAGATATTCTCTCAATGACATATATACATACACTGGTAGCATTTTGATTGCTGTTAATCCATTCACAAAGCTTCCCCATCTATACAATGTTCACATGATGGAGCAGTACAAGGGAGCACCTTTTGGGGAACTGAGCCCTCATGTTTTTGCCGTTGCTGATGCATCATATAGAGCAATGATTAGTGAGGGTCGAAGCCAGTCTATATTGGTCAGTGGAGAGAGTGGGGCAGGGAAAACTGAGACAACAAAATTGATTATGCAGTATCTTACATTCGTTGGAGGTCGAGCGTCGGGCGATAACAGAACTGTTGAGCAACAAGTTCTTGAATCAAATCCTTTACTGGAAGCATTTGGTAATGCAAGGACAGTTAGAAATGATAATTCAAGTCGTTTTGGAAAGTTTGTTGAAATTCAATTTGATGCCAATGGTAGAATATCAGGTGCTGCAATTAGAACTTATCTTCTAGAACGTTCTCGTGTTGTACAAATCACAAACCCTGAGAGGAACTATCATTGTTTTTATCAGCTATGTGCATCCGGAAGGGATGCAGAGAAGTACAAGTTAGACCACCCAAGTCATTTTCGATACTTAAATCAAAGCAAGACCTATGAATTAGATGGAGTGAGCAATGCTGAAGAGTATACTAGGACGAGGAGGGCAATGGACATAGTTGGTATCAGTCATGAGGATCAGGAAGCTATCTTTCGTACGTTGGCTGCGATTTTGCATCTGGGGAATGTTGAGTTTTCTCCTGGAAAAGAATACGACTCTTCAGTCTTGAAGGACGAAAAGTCTACCTTTCATTTAGGGGTGGCTTCTAATCTTCTCATGTGTGATTCCAACCTCTTGGTCTCAGCCCTTTGTACTCGCTCAATTCAAACTCGTGAAGGAATTATTGTCAAAGCACTAGACTGTGAAGGTGCTGTTGCTAGTCGGGATGCATTGGCAAAGACTGTTTATGCTCGTCTCTTTGATTGGCTTGTTGATAAGATTAACCGGTCTGTTGGGCAAGATTTGAATTCTCAATTTCAAATTGGGTTACTGGACATTTATGGTTTCGAATGCTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTCTTTAAGATGGAACAGGAGGAGTATAGCAAAGAGGAGATAAATTGGAGCTACATTGAATTCATTGACAATCAGGATGTGTTGGACTTGATTGAGAAGAAACCTATTGGGATCATTGGTTTGCTGGATGAGGCTTGTTTGTTCCCAAGATCAACTCATGAAACATTCTCAACCAAATTGTTTCAGAATTTTCGTACTCATCCGAGGTTGGAAAGAACTAAATTTTCAGAAACAGATTTCACCCTTTCCCATTATGCTGGAAAGGTCACTTATCATACAGATACCTTTTTAGATAAAAATCGCGATTATGTTGTGGTAGAGCATTGCAATCTGTTGGCTTCTTCTAGATGCAATTTTGTTGCTGGCCTTTTCTCTTCCTTACCAGAGGAATCTTCAAGATCATCGTATAAATTTTCTTCCGTAGCCTCAAGATTTAAGCAACAACTTCAAGCACTCATGGAGACACTGAATTCTACTGAGCCCCATTATGTACGCTGTGTGAAGCCAAACTCTTTTAATAGGCCCCAGAAGTTTGAGAACCTAAGCATTCTGCATCAATTACGTTGTGGGGGTGTTTTGGAGGCTGTTCGAATAAGTCTAGCAGGTTATCCCACCAGAAGAACTTATGCAGAGTTTATTGACCGTTTTGGTTTGTTGGCACCTGATTTATTGGATGGAAGCTACGATGAAAGGTTGATTACAGAAAAGATTCTACAAAAGTTGAAGCTAAGAAATTTTCAGTTGGGTAGGACCAAAGTGTTTCTGAGGGCTGGTCAAATTGGAATACTGGATGCACGAAGAGCTGAAGTATTAGACAATGCTGCGAAGTGCATTCAACGCCGATTACGAACATATCATGCACGCAGGGATTTTCTATTGATGCGTTTTACTGCAATGGCACTCCAAGCATATTGTAGAGGATGCCTTGCCCGGAAGTTTTATGTAGCAAAACGAGAAAGCACTGCTGCCACTACGATACAGAAATATTTTCGCAGGTGGTTCTTCAGGAATATTTATTTGGAGGTCTATTCAGCTGCTCTAACCATACAGTCCGGTGTTCGTGGTTTTGCAACTCGCAATAGGTTTTTCCATGATAGAAGAAATAAAGCTGCGGTATTAATTCAGGCTCAATGGAGGACATTCAAAGTTCGTGCTGTTTTCCATCGCCACCAAGCTTCTATTATTGCAATACAGTGTCGATGGAGGCAAAAGCTTGCAAAAAGGGAACTTCGAAGACTTAAGCAAGAGGCTAATGAAGCTGGAGCATTGCGTTTAGCTAAAAACAAACTTGAGAAGCAGTTGGAAGATCTTACGTGGCGGTTGCATTTGGAGAAAAGATTGCGGGCTTCCAATGAAGAGGCCAAGTCAAACGAAATATTAAAATTGCAAAAGATGCTGGAATCCTTGAGTCTGGAGTTAGATGCAGCTAAATTGGCTGCAATCAATGAATGCAACAAAAATTATGTGCTGCAAAACCAAATGGAATTGTTGGCGAAGGAGAAGTATGCTTTTGAAAGAGAAATTGTAGCGGTAGTTGAAGTAAAAAAAGAAAATGCTTTCCTCAAGAGTGCTTTGGACACCATGGAGAAACGGAACTCAGCTCTGGAAGTTAAGCTTGTTGAGGCACAAAAGGATGGTAGCCACACTGTTGAAAAGTTGCAGGATGTTGAACAAAAATGCACTAAGCTTCAACAGAATGTGAAAAGTCTCGAAGAGAAACTCTCAGTTCTAGAGGACGAGAATCATGTATTGCGACAGAAAGCTTTAGGTGCAACTCCAAGGAGCAACCGACCCAATTTTGTTAGGGCATTCTCGGAGAAATCCTCTGGTGCGCTTGTCCTTAATGCTGATCGGAAAACTCTATTTGAGTCACCAACACCTACAAAACTGGTTGCACCTTTTCCACAAAGCCTCTCTGAATCACGGCGAACAAAATTAACCGTAGAGAGACACCAGGAAAACTATGAAGTCCTTTCTAGGTGTATTAAAGAAAATTTGGAGTTTAAAGGTGGCAAGCCACTGGCCGCTTGCATCATCTACAAATGCCTTCTTAACTGGCATGCCTTTGAATCAGAACGAACAGTTATTTTTGACTATATAATTGAAGGAATCAATGATGCCCTCAAGGCTGGGGACGAGAACATTACCTTGCCATATTGGTTGTCAAATGCATCTGCATTACTATGCCTCTTGCAAAGAAATTTAAAGTCGAATGGGTTTTTGAGTGCAGCTTCTCAGCGTTCCACAGGTTCCACCGGCTTAGCTAGCAGGATTTCTCAGGGACTAAAATCACCCTTCAAATATATTGGGTTTGAAGATGGGATTTCTCATCTTGAAGCAAGATATCCGGCAATATTGTTTAAACAGCAATTAACTGCTTGTGTGGAGAAGATTTTTGGCTTGATCCGTGATAATTTGAAGAAAGAATTATCTCCATTGTTGAGCTCATGTATTCAGGCACCAAAAGCTGCACGAGTACATGCTGGGAAGTCCTCTAGATCACCTGGTGTTCCCCAGCCATCTACAAGTAGTCCATGGGATAACATAATAAAGTTTTTGGATTCTTTGATGAGTCGATTACGTGCGAATCATGTACCGTCTTTCTTCATTCGTAAATTGATTACTCAGGTGTTCTCGTTCATCAATATTTCGCTTTTTAATAGCCTTCTTCTACGACGTGAATGTTGTACGTTTTCAAATGGGGAGTACGTGAAATCTGGTCTTGCGGAACTTGAGAAGTGGATTGGCAACGCAACAGATGAGTATTCAGGGACCTCTTGGCACGAGCTAAACTATATAAGGCAAGCTGTCGGGTTTCTGGTAATACATCAGAAGCGAAAGAAATCACTAGAAGAGATAAGACAGGATCTTTGCCCTGCATTGACAGTGAGACAAATTTATCGCATTAGTACTATGTATTGGGATGATAAATACGGGACTCAGAGTGTGTCAAACGAGGTGGTTGCTCAAATGAGGGAAATTCTCAACAAGGACAATCAGAACTTAACCTCAAATTCATTTTTATTGGATGATGATCTAAGCATCCCCTTCTCTACAGAAGACATTGATATGGCTCTTCCCGCCATTGAACCTTCGGACATTGAACTTCCCACTTTCCTGTTGGAATACCCCTATGATGTGACTGGTCTCATTTCTCCATTCATTCGATTAAGTGTATGTAAATATGTAAATTTAGGACCCCCCCAAGCTTCAGATAAGACATTGTTAGGATCCAATGTTATTTTTAGTAAAGATTTGCTTAGAAAATGTAGCAAGTGTTGTATCCAATGA 4674 41.1 MSLRKGSKVWVEDKDFAWVAAEVLDFVGKQVRVSTVTGKKVLALPEKLLPRDADEDDHGGVDDMTKLTYLNEPGVLYNLQRRYSLNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRASGDNRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDANGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAEKYKLDHPSHFRYLNQSKTYELDGVSNAEEYTRTRRAMDIVGISHEDQEAIFRTLAAILHLGNVEFSPGKEYDSSVLKDEKSTFHLGVASNLLMCDSNLLVSALCTRSIQTREGIIVKALDCEGAVASRDALAKTVYARLFDWLVDKINRSVGQDLNSQFQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIGLLDEACLFPRSTHETFSTKLFQNFRTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCNLLASSRCNFVAGLFSSLPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSFNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRTYAEFIDRFGLLAPDLLDGSYDERLITEKILQKLKLRNFQLGRTKVFLRAGQIGILDARRAEVLDNAAKCIQRRLRTYHARRDFLLMRFTAMALQAYCRGCLARKFYVAKRESTAATTIQKYFRRWFFRNIYLEVYSAALTIQSGVRGFATRNRFFHDRRNKAAVLIQAQWRTFKVRAVFHRHQASIIAIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRASNEEAKSNEILKLQKMLESLSLELDAAKLAAINECNKNYVLQNQMELLAKEKYAFEREIVAVVEVKKENAFLKSALDTMEKRNSALEVKLVEAQKDGSHTVEKLQDVEQKCTKLQQNVKSLEEKLSVLEDENHVLRQKALGATPRSNRPNFVRAFSEKSSGALVLNADRKTLFESPTPTKLVAPFPQSLSESRRTKLTVERHQENYEVLSRCIKENLEFKGGKPLAACIIYKCLLNWHAFESERTVIFDYIIEGINDALKAGDENITLPYWLSNASALLCLLQRNLKSNGFLSAASQRSTGSTGLASRISQGLKSPFKYIGFEDGISHLEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLSSCIQAPKAARVHAGKSSRSPGVPQPSTSSPWDNIIKFLDSLMSRLRANHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATDEYSGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMREILNKDNQNLTSNSFLLDDDLSIPFSTEDIDMALPAIEPSDIELPTFLLEYPYDVTGLISPFIRLSVCKYVNLGPPQASDKTLLGSNVIFSKDLLRKCSKCCIQ 1557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16705509 16745098 - Lsi08G008300.1 Lsi08g00830 668756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00830 1557 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Lsi08g00830 1557 Pfam Myosin head (motor domain) 61 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 777 IPR027417 -
Lsi08g00830 1557 Coils Coil 972 1006 - -
Lsi08g00830 1557 ProSiteProfiles Dilute domain profile. 1159 1458 IPR002710 -
Lsi08g00830 1557 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Lsi08g00830 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 878 IPR027417 -
Lsi08g00830 1557 Coils Coil 920 940 - -
Lsi08g00830 1557 Coils Coil 1014 1048 - -
Lsi08g00830 1557 ProSiteProfiles IQ motif profile. 805 832 IPR000048 GO:0005515
Lsi08g00830 1557 CDD MyosinXI_CBD 1110 1481 IPR037975 GO:0007015
Lsi08g00830 1557 Gene3D - 731 781 - -
Lsi08g00830 1557 Gene3D - 782 827 - -
Lsi08g00830 1557 Gene3D - 828 879 - -
Lsi08g00830 1557 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 Coils Coil 864 908 - -
Lsi08g00830 1557 CDD MYSc_Myo11 73 717 IPR036018 -
Lsi08g00830 1557 Gene3D - 435 620 - -
Lsi08g00830 1557 PANTHER PROTEIN OPAQUE1-LIKE 3 1502 - -
Lsi08g00830 1557 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Lsi08g00830 1557 Gene3D Kinesin motor domain 62 659 IPR036961 -
Lsi08g00830 1557 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 SMART iq_5 731 753 IPR000048 GO:0005515
Lsi08g00830 1557 SMART iq_5 802 824 IPR000048 GO:0005515
Lsi08g00830 1557 SMART iq_5 850 872 IPR000048 GO:0005515
Lsi08g00830 1557 SMART iq_5 754 776 IPR000048 GO:0005515
Lsi08g00830 1557 SMART iq_5 827 849 IPR000048 GO:0005515
Lsi08g00830 1557 SMART iq_5 779 801 IPR000048 GO:0005515
Lsi08g00830 1557 Gene3D - 663 730 - -
Lsi08g00830 1557 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 Pfam IQ calmodulin-binding motif 805 823 IPR000048 GO:0005515
Lsi08g00830 1557 Pfam IQ calmodulin-binding motif 830 848 IPR000048 GO:0005515
Lsi08g00830 1557 Pfam IQ calmodulin-binding motif 783 800 IPR000048 GO:0005515
Lsi08g00830 1557 Pfam IQ calmodulin-binding motif 759 773 IPR000048 GO:0005515
Lsi08g00830 1557 Pfam IQ calmodulin-binding motif 734 752 IPR000048 GO:0005515
Lsi08g00830 1557 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi08g00830 1557 Pfam DIL domain 1334 1437 IPR002710 -
Lsi08g00830 1557 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Lsi08g00830 1557 SMART DIL_2 1333 1440 IPR002710 -
Lsi08g00830 1557 Gene3D - 249 306 - -
Lsi08g00830 1557 PANTHER MYOSIN 3 1502 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01280 Lsi-Chr4:20201696 Lsi08g00830 Lsi-Chr8:16705509 9.03E-132 dispersed
Lsi08g00830 Lsi-Chr8:16705509 Lsi11g00416 Lsi-Chr11:4374341 0 dispersed
Lsi08g00830 Lsi-Chr8:16705509 Lsi09g01808 Lsi-Chr9:26861807 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00830 K10357 - csv:101210527 2870.11