Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00832 ATGGCTATCCAATTCAAGTTCAGGAGTTCCGTGAACTTCGACTCGGTGGATATCCAAGGCCGACCTTCCATATCAATTGGCGATCTTAAATCCAAGATTATTCGCATGAAAAACCTCGATACCTGCCAAAACTTTGATCTCGTATTCTCCGATGCCCGAACCGGCCAAGAGTTGGCCGACGAGAAACTTGAAATTCCAAGTGGTTCATGCGTGATAATCAAGAGAGTTCCCGCAGGATCAGCTCCTTCCAATGTTGTTCCTCACGACTTGTTTGGGAATTTTCAAGTCAAAGACACTGACATGGTTAATTCATCTCGTCCAGTGAATGCTGAGACAGACAATTTTGATGATTTTGGCATCGACTTATACCCTATTCGCAAAGCAAACTCATCAATTTCACTCAATAATGAAAATAACAATGCTGTTAGACATTATAAAGAGACTGAAGGAGGATATATTGAGCCTGAAGGAAGTGGCATCAGTGAGGCTATTCAAGGAGATTCAAGTCATGGCACACCAGTTGGAAGAACTGACCTGCAGACGAACATAAAAGTTAATGTTGGCGAGGGCATTGGCTTGGAGAAACCAATTGCTCCAGTGAATCATAATAGTGAAATTCCTTCAGAACTGAAGTGTACTCTTTGCAACTCACTCTTCGAGGATGCTGTAATTACTGGTTGCTGCATTCGTCATGTACTGCTGCGAAAGGCAATGTGCCCCAAGTGTGCCTCTAAGTATAAACTAGAAAATTTGTTGCCAAATTTCTCCCTTAGGCAAAATGTTGCCCATTTCCTCGAGTCCCGGATCGTGATGGGCGACTCAGACAATGCTTATCATCATGAGGCACCAGATGAAGAATCAAGAATTGAAGGAAAAGACATGCCTTGTTTGCCTTATGGTACTAGTAGGGGATGTAATCAAGAAGTGGTGGAAGATGTCCATGTCTCATCAATAAGAAGAAATATGACAGTTAAAGTTGATGGAGCACAATTTCGATCATGCCATCCTGATAAATTTGGTGGTAAACCTCAGGACCTCTCTCCTTTTGATGATTGTCAAGGGGAAAGTCAGCCTGTTTTTGGGGATTTTAAGCATGGGTTGCTGGTCAATGACTCTGATATACCAGGCAAAATCCAAAATCTCACAGATTTTAGAAGACAGAAAAAGCGTGGCCGTGCTTGTTACATGTGTGGTTCTCTGGATCATCTCATTAGAGACTGTCCAGTTGCTTCAAAGCCACATCCCATGCATCTAATGGGAGCTTCGCCATATTATGCACCGCCTTGGCCTCATGTCAGTTCTTTTACAAACGTTTATGGTTGTCCCATGGCTTTCAATACACCAATGGTGCCTGATGCAAATTCTTACTGGGCATCTATTTATGGTGGATACCCTGCCCCAAGTGGATTTGTGGGCATGAGAGACATGAATGCTCCACCACTTCAGAAGACCGAAGAGTTCTGTGCTGGTTATTCAGAATTCATAGACTTTAGTGACGCTAATAAAAAAAGGACAATACCTGAAAATCGTACCTGGAGGGTAATGCCTTTCTCCAATGAGGATGGGAGTGAGGGAGAAGATCATGTTGGTAAGAAGAGAGGTCAACATGAGCGGGATGGAAGATTAAGAGACTATAGAATGCTTGAAAGGGAACATCTGCACAAAGAAAATACCAAGGACGACATAAATTGGCTCTATGATGAGAAAAGGAAGAGTTCCCATTCTTCTAAAGCTGCAATGAGATTAAACGAGAGATTAAGGTTGGACACAGAAGGCTTGCCTTGCAGCACCAAATTACTGACTAAGGAGAGGTCTCCAAATCACCATAGATGCTTCAGGGAGGTTGGTGGGAGGACAGATGAATGTTGCAGTCATGCTGATTTGAATGACCATAAAAGATGCAAACGGAAAGATGATAAAATTGGTGCAGTTGATGTCGACTTAAAGTGTCATACTAAGAAACATCACAGTGGCTCAAAGTCTGATTTGGCACGTAGCTATTCCAGTAATCAGAAACTCCTACAAAAAGAGTCCGGTTTCGTGTCTAGATATTCTAAGCACAATGAGCTTGCTCAATATCATCGGCAAATGGTTGGTGGGACAGATGATAATCGTGAAGAATGGAACCATAAATATAAACGAAAAAGGTTTGTGAAAAACTATAGAACTGAATTCTAA 2178 42.19 MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQELADEKLEIPSGSCVIIKRVPAGSAPSNVVPHDLFGNFQVKDTDMVNSSRPVNAETDNFDDFGIDLYPIRKANSSISLNNENNNAVRHYKETEGGYIEPEGSGISEAIQGDSSHGTPVGRTDLQTNIKVNVGEGIGLEKPIAPVNHNSEIPSELKCTLCNSLFEDAVITGCCIRHVLLRKAMCPKCASKYKLENLLPNFSLRQNVAHFLESRIVMGDSDNAYHHEAPDEESRIEGKDMPCLPYGTSRGCNQEVVEDVHVSSIRRNMTVKVDGAQFRSCHPDKFGGKPQDLSPFDDCQGESQPVFGDFKHGLLVNDSDIPGKIQNLTDFRRQKKRGRACYMCGSLDHLIRDCPVASKPHPMHLMGASPYYAPPWPHVSSFTNVYGCPMAFNTPMVPDANSYWASIYGGYPAPSGFVGMRDMNAPPLQKTEEFCAGYSEFIDFSDANKKRTIPENRTWRVMPFSNEDGSEGEDHVGKKRGQHERDGRLRDYRMLEREHLHKENTKDDINWLYDEKRKSSHSSKAAMRLNERLRLDTEGLPCSTKLLTKERSPNHHRCFREVGGRTDECCSHADLNDHKRCKRKDDKIGAVDVDLKCHTKKHHSGSKSDLARSYSSNQKLLQKESGFVSRYSKHNELAQYHRQMVGGTDDNREEWNHKYKRKRFVKNYRTEF 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16752332 16759824 + Lsi08G008320.1 Lsi08g00832 668758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00832 725 SUPERFAMILY Retrovirus zinc finger-like domains 385 412 IPR036875 GO:0003676|GO:0008270
Lsi08g00832 725 Gene3D - 1 81 - -
Lsi08g00832 725 Gene3D - 386 437 - -
Lsi08g00832 725 Pfam DWNN domain 3 77 IPR014891 GO:0008270
Lsi08g00832 725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 267 IPR013083 -
Lsi08g00832 725 MobiDBLite consensus disorder prediction 520 538 - -
Lsi08g00832 725 SMART DWNN_2 3 77 IPR014891 GO:0008270
Lsi08g00832 725 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270
Lsi08g00832 725 MobiDBLite consensus disorder prediction 515 538 - -
Lsi08g00832 725 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBBP6-LIKE ISOFORM X1 1 717 - -
Lsi08g00832 725 ProSiteProfiles Zinc finger CCHC-type profile. 394 408 IPR001878 GO:0003676|GO:0008270
Lsi08g00832 725 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 1 717 IPR033489 GO:0006397|GO:0016567|GO:0061630
Lsi08g00832 725 SUPERFAMILY RING/U-box 204 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00832 - - - bhj:120075688 1271.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01284 Lsi-Chr7:18760797 Lsi08g00832 Lsi-Chr8:16752332 2.88E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00832 Lsi_Chr08 FPKM 44.523342 43.513973 84.339851 77.119698 2.143916 2.504809 1.915822 4.793257 3.061958 4.097072