Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00836 ATGGGTCCTGCAGTTCTAAGCTCCCACACCAATGGCTTCTCTCAATCAGTTGATCTAAATTTCGAAGAGAAAAGCACTTACATCAATGGCGGCAATTCTTCTCACGAATCGGTAATCAACAATGTTAATGGCGACGATTGCCATTGGTACGAAGAAATCATCGACGAAAACGTCAAATGGTCCTTTGCTCTGAACAGCGTTCTGCAGAAAGGAACCAGTGAGTTTCAGGATATCGCTCTTTTAGATACGAAGCGTTTCGGAAAAGTGCGTATATCAAGTTCCGAATTCCGGTTCTGTTTCGTGATTTTCTGCCGATTCTTGAAATCTTTTGAATCGGATGTTGTGGATTTCTGCCGCAAACATTTGACTGTGAACCGAGAAGCCTTTTGTCACAAGAAACTTCATCTTGTAATAAACGATGCTAGGGCGGAATTGGAAAAGAGAAACGAGAAATATGATATAATTATAGGAGATCTAGCAGATCCTGTTAAAGATGGGCCTTGCTATAAGCTCTACACCAAATCATTTTACAACGACATCGTCAAACCTAAACTCCACCACAATGGCATCTTTGTAACTCAGGCAGGACCAGCCGGGATTTTCACCCACAAAGAGGTTTTTACTTCAATTTATAACACAATCAAACAGACTTTCAACTATGTGATTGCTTACACGGCTTACATACCATCTTTTGCAGACACATGGGGATGGGTTATGGCATCAGATCATCCTTTCTGTATAAAATCTGAGGAATTGGATAAGAGAATTGAGGATAGAATCGATGGGGAGTTGCTCTATTTAACTGAATGGAATTATTACTCGTCATTGGTTCAATCCATGGTAGCCACCTACCTAGGATTTAACATCCTACCGGTTTCCTTGACACCCAAATATTGTAGAGTCAAGCGAGTTGTCCGTGAGATTAGTCAAGTGGATAAAATGGATGAGACGCAATCTCCTTCTCCGCAACACCGTTCCTCCCTGCCTGAGAGAGAAAAATATCGTCCGAATGTTCTATTGTCAATGGCAACATCAACCACTCCTGCGCTAATTAGCTCGGAGCAGTTCAAATCCTCCGCCTCCATTCTTCCGCCTCTGCCGGTCAGATTCACCGCCGCCAATACTAAGAATCACTGGCGAGTGAGGTGCGCATTGTCCTCGAACAATTGGCGGGAGAGTAGGCGACTGTTCTCTATTTCTCTTGTCCTCTCAAATTTGTTCCTGATTCCTGATCATGCCTCTTCCGGAAGCTTTATGGACAAATACGTGAAGAAGAAAAAGCTGGATCCGCTTGAAGTTTATGTTCCAGCCGTCATATTGACGAAGTTACAAATCAAAGACGTCGGGAAAATTTTGGAAAGTAGTAAACCAGAATACGCGACATGCCGATCTCTCTTGCGTTCTGGACTTGCATCATCCCTTCGTGTAAATATTCGAGCAGTTGCACAATATGCATCGGAGGATGGAAATGGAAACATTGCGTTTGACAACGTTGATCAATGTCTCAGAGCCCTGGAAGAACTTGATTCTTCGCTTTTACGTGCCACAAGAAATGATCAAGGAACCTCTATTGAGTCGATGAAGACCAATATTGACACTGCCGTCCTTGCTCTAGACCGGCTCCTTCAAACTGTTCCTCCCGATGTGTTGGCCAAAGGGAAGGCCATTGCTGATGCTTATAGTTCTCCGGAAGAGGAGGAAACTGAAATTGTAGACCCACAACTGAAGCAGTTGGAATCGATTTTATAA 1749 43.4 MGPAVLSSHTNGFSQSVDLNFEEKSTYINGGNSSHESVINNVNGDDCHWYEEIIDENVKWSFALNSVLQKGTSEFQDIALLDTKRFGKVRISSSEFRFCFVIFCRFLKSFESDVVDFCRKHLTVNREAFCHKKLHLVINDARAELEKRNEKYDIIIGDLADPVKDGPCYKLYTKSFYNDIVKPKLHHNGIFVTQAGPAGIFTHKEVFTSIYNTIKQTFNYVIAYTAYIPSFADTWGWVMASDHPFCIKSEELDKRIEDRIDGELLYLTEWNYYSSLVQSMVATYLGFNILPVSLTPKYCRVKRVVREISQVDKMDETQSPSPQHRSSLPEREKYRPNVLLSMATSTTPALISSEQFKSSASILPPLPVRFTAANTKNHWRVRCALSSNNWRESRRLFSISLVLSNLFLIPDHASSGSFMDKYVKKKKLDPLEVYVPAVILTKLQIKDVGKILESSKPEYATCRSLLRSGLASSLRVNIRAVAQYASEDGNGNIAFDNVDQCLRALEELDSSLLRATRNDQGTSIESMKTNIDTAVLALDRLLQTVPPDVLAKGKAIADAYSSPEEEETEIVDPQLKQLESIL 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16804463 16814757 + Lsi08G008360.1 Lsi08g00836 668762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00836 582 Pfam Spermidine synthase tetramerisation domain 49 89 IPR035246 -
Lsi08g00836 582 Gene3D Vaccinia Virus protein VP39 110 283 IPR029063 -
Lsi08g00836 582 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 42 91 - -
Lsi08g00836 582 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 110 275 - -
Lsi08g00836 582 Pfam Spermine/spermidine synthase domain 113 241 - -
Lsi08g00836 582 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 113 242 IPR030374 -
Lsi08g00836 582 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 249 IPR029063 -
Lsi08g00836 582 Gene3D Spermidine synthase, tetramerisation domain 48 91 IPR037163 -
Lsi08g00836 582 PANTHER BNAA02G04280D PROTEIN 42 91 - -
Lsi08g00836 582 PANTHER BNAA02G04280D PROTEIN 110 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00836 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - csv:101210030 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00836 Lsi-Chr8:16804463 Lsi11g00166 Lsi-Chr11:1770665 7.36E-72 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g146 . . . . Bpe02g01556 . . . Cmo05g00427 Cmo12g00250 . . . . . . . Bhi04g01088 . . . . . . . . . . . . . . . Cone17ag0940 Cone20ag0283 . . . . . Blo18g00262 Bda01g01344 Bda13g01302 . . Bma01g00913 . . . . . . . Car05g00351 Cpe11g00355 . . . . . . . . Cla08g00991 Cam08g1437 Cec08g1016 Cco08g1139 Clacu08g1142 . Cre08g0927 Lsi08g00836 . Chy03g01199 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013292 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00836 Lsi_Chr08 FPKM 7.12214 9.891133 9.743357 10.001805 10.863299 9.564313 11.287319 4.267178 3.609351 4.368063