Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g00841 | ATGGACGGCGGCGCTCCGTACAATCCACGTACCGTGGAAGAGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGGTTTGTTTTATCGCTTCTTCGTTTACGTTTTTGGATTCTAGTGTGCATTTGTCCGAGACTGAGAGAGATGTTAGAATTTTCAGCTTATTTTCCTTAGCTAAGAAAGAAAATCTTTGCCTATACGGATTCCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTTCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATTAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGTATGTGTTCTTCTGA | 420 | 44.05 | MDGGAPYNPRTVEEMLKSSTSNVILVCFIASSFTFLDSSVHLSETERDVRIFSLFSLAKKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRYVFF | 139 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 16866771 | 16868471 | + | Lsi08G008410.1 | Lsi08g00841 | 668767 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g00841 | 139 | PANTHER | CPG BINDING PROTEIN | 42 | 139 | IPR045104 | GO:0006355|GO:0042393 | |
| Lsi08g00841 | 139 | Pfam | Alfin | 48 | 137 | IPR021998 | GO:0006355|GO:0042393 | |
| Lsi08g00841 | 139 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 5 | 42 | 139 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi08g00841 | Lsi-Chr8:16866771 | Lsi04g00981 | Lsi-Chr4:10489977 | 1.38E-39 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g00841 | - | - | csv:101208889 | 177.178 |