Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00842 ATGACCGAGTCTTTTTATTTTAGTTTGGCTCCTTTTTGGGCGGTCTTTTTGTTGGTCTCGGTTGTGGGTCTTCTCTTGATTTTCTTGTATTCTCTCATTTTTATCTCCGTGATAGTTTTGTTTCTTGATGAAGGTTCCATGATTGGGAACTCAAGTTTCTGTTGCTTTTGTTGCAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAGGACGAGGAAGGCTTGGAAGAAGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAATTCTGGATTTGCTGTGATATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 579 39.55 MTESFYFSLAPFWAVFLLVSVVGLLLIFLYSLIFISVIVLFLDEGSMIGNSSFCCFCCRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16868547 16871158 + Lsi08G008420.1 Lsi08g00842 668768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00842 192 MobiDBLite consensus disorder prediction 84 132 - -
Lsi08g00842 192 CDD PHD_AL_plant 138 188 IPR044104 -
Lsi08g00842 192 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 57 192 - -
Lsi08g00842 192 SMART PHD_3 138 186 IPR001965 -
Lsi08g00842 192 PANTHER CPG BINDING PROTEIN 57 192 IPR045104 GO:0006355|GO:0042393
Lsi08g00842 192 ProSitePatterns Zinc finger PHD-type signature. 139 185 IPR019786 -
Lsi08g00842 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 187 IPR013083 -
Lsi08g00842 192 SUPERFAMILY FYVE/PHD zinc finger 128 189 IPR011011 -
Lsi08g00842 192 MobiDBLite consensus disorder prediction 84 113 - -
Lsi08g00842 192 ProSiteProfiles Zinc finger PHD-type profile. 136 188 IPR019787 -
Lsi08g00842 192 Pfam PHD-finger 139 188 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00982 Lsi-Chr4:10500418 Lsi08g00842 Lsi-Chr8:16868547 8.00E-43 dispersed
Lsi08g00842 Lsi-Chr8:16868547 Lsi11g00171 Lsi-Chr11:1805696 4.26E-59 dispersed
Lsi08g00842 Lsi-Chr8:16868547 Lsi02g02913 Lsi-Chr2:35346170 9.75E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25766 PF00628 PHD 1.10E-10 CL0390 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00842 - - csv:101208889 220.32