Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00842 ATGACCGAGTCTTTTTATTTTAGTTTGGCTCCTTTTTGGGCGGTCTTTTTGTTGGTCTCGGTTGTGGGTCTTCTCTTGATTTTCTTGTATTCTCTCATTTTTATCTCCGTGATAGTTTTGTTTCTTGATGAAGGTTCCATGATTGGGAACTCAAGTTTCTGTTGCTTTTGTTGCAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAGGACGAGGAAGGCTTGGAAGAAGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAATTCTGGATTTGCTGTGATATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 579 39.55 MTESFYFSLAPFWAVFLLVSVVGLLLIFLYSLIFISVIVLFLDEGSMIGNSSFCCFCCRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16868547 16871158 + Lsi08G008420.1 Lsi08g00842 668768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00842 192 MobiDBLite consensus disorder prediction 84 132 - -
Lsi08g00842 192 CDD PHD_AL_plant 138 188 IPR044104 -
Lsi08g00842 192 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 57 192 - -
Lsi08g00842 192 SMART PHD_3 138 186 IPR001965 -
Lsi08g00842 192 PANTHER CPG BINDING PROTEIN 57 192 IPR045104 GO:0006355|GO:0042393
Lsi08g00842 192 ProSitePatterns Zinc finger PHD-type signature. 139 185 IPR019786 -
Lsi08g00842 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 187 IPR013083 -
Lsi08g00842 192 SUPERFAMILY FYVE/PHD zinc finger 128 189 IPR011011 -
Lsi08g00842 192 MobiDBLite consensus disorder prediction 84 113 - -
Lsi08g00842 192 ProSiteProfiles Zinc finger PHD-type profile. 136 188 IPR019787 -
Lsi08g00842 192 Pfam PHD-finger 139 188 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00842 - - - csv:101208889 220.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00982 Lsi-Chr4:10500418 Lsi08g00842 Lsi-Chr8:16868547 8.00E-43 dispersed
Lsi08g00842 Lsi-Chr8:16868547 Lsi11g00171 Lsi-Chr11:1805696 4.26E-59 dispersed
Lsi08g00842 Lsi-Chr8:16868547 Lsi02g02913 Lsi-Chr2:35346170 9.75E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00769 . 1 242 Alfin-like Transcription Factor Family AT1G14510 80.2 7.9e-104 373.6
Lsi03g02216 . 14 243 Alfin-like Transcription Factor Family AT1G14510 58.2 5.7e-78 287.7
Lsi02g02913 . 107 311 Alfin-like Transcription Factor Family AT1G14510 66.5 5.3e-76 281.2
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT1G14510 68.6 8.3e-45 177.6
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G26210 71.4 2.6e-86 315.5
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G26210 66.4 1.2e-80 296.6
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT5G26210 58.1 4.0e-79 291.6
Lsi04g00981 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.4e-45 177.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G26210 64.4 1.6e-43 173.3
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G26210 58.3 6.9e-39 157.9
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT3G42790 68.0 1.4e-81 299.7
Lsi03g02216 . 14 245 Alfin-like Transcription Factor Family AT3G42790 58.3 6.7e-79 290.8
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT3G42790 63.8 2.1e-77 285.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT3G42790 67.2 2.6e-43 172.6
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT3G42790 61.2 1.5e-38 156.8
Lsi03g02216 . 7 246 Alfin-like Transcription Factor Family AT5G05610 73.4 9.8e-104 373.2
Lsi02g02913 . 107 313 Alfin-like Transcription Factor Family AT5G05610 65.9 2.3e-76 282.3
Lsi05g00769 . 9 244 Alfin-like Transcription Factor Family AT5G05610 59.7 8.7e-76 280.4
Lsi04g00981 . 1 123 Alfin-like Transcription Factor Family AT5G05610 77.2 2.7e-53 205.7
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT5G05610 76.0 4.6e-53 204.9
Lsi08g00842 . 59 191 Alfin-like Transcription Factor Family AT5G05610 60.2 1.7e-39 159.8
Lsi11g00171 . 253 397 Alfin-like Transcription Factor Family AT5G05610 51.7 5.5e-38 154.8
Lsi03g02216 . 49 246 Alfin-like Transcription Factor Family AT3G11200 75.2 4.4e-85 311.2
Lsi02g02913 . 104 313 Alfin-like Transcription Factor Family AT3G11200 65.3 2.1e-74 275.8
Lsi05g00769 . 33 244 Alfin-like Transcription Factor Family AT3G11200 63.4 4.5e-69 258.1
Lsi04g00982 . 2 125 Alfin-like Transcription Factor Family AT3G11200 73.2 1.2e-50 196.8
Lsi04g00981 . 43 135 Alfin-like Transcription Factor Family AT3G11200 80.6 6.3e-39 157.9
Lsi05g00769 . 1 150 Alfin-like Transcription Factor Family AT2G02470 80.1 2.4e-68 255.8
Lsi03g02216 . 14 173 Alfin-like Transcription Factor Family AT2G02470 63.6 3.8e-53 205.3
Lsi02g02913 . 107 223 Alfin-like Transcription Factor Family AT2G02470 78.6 8.1e-48 187.6
Lsi04g00981 . 8 123 Alfin-like Transcription Factor Family AT2G02470 69.5 1.9e-44 176.4
Lsi05g00769 . 3 157 Alfin-like Transcription Factor Family AT5G20510 67.9 3.8e-58 221.5
Lsi02g02913 . 107 225 Alfin-like Transcription Factor Family AT5G20510 79.3 5.8e-51 197.6
Lsi03g02216 . 13 163 Alfin-like Transcription Factor Family AT5G20510 61.8 1.0e-50 196.8
Lsi04g00981 . 7 123 Alfin-like Transcription Factor Family AT5G20510 66.4 1.5e-43 172.9
Lsi08g00841 . 1 139 Alfin-like Transcription Factor Family AT5G20510 57.9 1.3e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0063683 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25766 PF00628 PHD 1.10E-10 CL0390 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00842 Lsi_Chr08 FPKM 84.427574 91.417023 99.08239 94.932487 71.944328 82.968422 70.54039 65.165535 75.991287 70.705704