Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00846 ATGGCAGAGATCAGTAGAAGAAAGAGGCTTGAAGAAGCCGCCATTGAAGGAAACGTAACAACATTGTTAGAGTTACTCCAACAAGATCCAATGTTACTTGCCAGACTCAACCTCAACGATTTCAACGACACTCCTCTGCACGTGGCTGCTCTTCTCGGTCACGTGACATTTGTCGATGAGATTCTGAACCGAAGGCCTCAGCTGGCTAAAGACTTGGATTCTCGCCGTTGTTCCGCCCTCCACTTGGCCGCCGCCCAAGGCTTTTTAGAAATTGTGAAAATTCTGGTAAGAGTTGATCCTGATATGTGTTCTATGTGCAATGAAGATGGCCGGAATCCTATTCATCTGGCCGCGGTGAGAGGCCGGGTTGATGTCTTGGCCGAGCTCGTTCGAGTCAGACCGGCAGCCGCTCGAACTGCCGTGGATGGAGGCGGAACGGTGTTGCATTTATGTGTGAAGTACAACCAGTTGGAGGCTCTGAAGATGTTGATTGAAAAGGTGGCAGTGAGAGACAATGGTTTTATTAATTCTCAGGATGATTATGGCTTCACTGTAATTACATGGTTGTCGAAAATAGTTGGAATCGACGTAAATGCTAAAACTTCAAATGGGTTCACAGCTCTGGACATTCTAACTCAAAGCCATAGAGATTTAAAGGACATGGATATTGCAGAGACTCTCAGAGCTGCCAATGCCGTCCGAACCACATACAAAAAACCGTCATCGTCGTCGTCGTCTTGGTCATCATTTTTCCGCAATGGTGATCGTTGGTTTTTCAACGGAAGAAGAGATTGGGTTAAGAAGCAAGATTCATTAATGGTTGTGGCATCACTAATTGCAACAATGGCTTTTCAAGCCGGAGTGAACCCTCCCGGCGGCGTTTGGCAAGACGATAAGGCCTCAGGGAATTCAACTCAGCCAGCAGGAACATCGATATTTGCTACAAAACACAAAGAAACGTATGATAAGTACGTTGTGTTTAACACAATAGGATTCACGACTTCACTGATTTCAATTCTGCTGATTATTACTGGGTTGCCTGAGAAACAAATTTTTATGAGGATTCTAATAATTACGATGTGGCTTGCGGTGAGTTCCATGGCTTACACTTATGGATATTCCATAAAATATTTCACTCCACAACAACCAAAGGGATCTGATTCAAGTTCTATGGCTCCAGCACCTGCAGGACCCACCGTCTTCGATTACCCAAGTATTGTTGGACACGGCTTAAGCGTATTTTCCATTTTCATTTGGGTGGCCATATTGGCTACTTCTTCCGTCGGTCTGTTCCTCATCTGGAAGCTCTTCTACCTTCGTTTTCGAAAGAATAATACTACTCAACATCGACTGCCTTCCCTTGTTGTA 1368 44.96 MAEISRRKRLEEAAIEGNVTTLLELLQQDPMLLARLNLNDFNDTPLHVAALLGHVTFVDEILNRRPQLAKDLDSRRCSALHLAAAQGFLEIVKILVRVDPDMCSMCNEDGRNPIHLAAVRGRVDVLAELVRVRPAAARTAVDGGGTVLHLCVKYNQLEALKMLIEKVAVRDNGFINSQDDYGFTVITWLSKIVGIDVNAKTSNGFTALDILTQSHRDLKDMDIAETLRAANAVRTTYKKPSSSSSSWSSFFRNGDRWFFNGRRDWVKKQDSLMVVASLIATMAFQAGVNPPGGVWQDDKASGNSTQPAGTSIFATKHKETYDKYVVFNTIGFTTSLISILLIITGLPEKQIFMRILIITMWLAVSSMAYTYGYSIKYFTPQQPKGSDSSSMAPAPAGPTVFDYPSIVGHGLSVFSIFIWVAILATSSVGLFLIWKLFYLRFRKNNTTQHRLPSLVV 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16892001 16895950 + Lsi08G008460.1 Lsi08g00846 668772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00846 456 Gene3D - 3 245 IPR036770 -
Lsi08g00846 456 Pfam Domain of unknown function 267 374 IPR026961 -
Lsi08g00846 456 SMART ANK_2a 109 138 IPR002110 GO:0005515
Lsi08g00846 456 SMART ANK_2a 143 172 IPR002110 GO:0005515
Lsi08g00846 456 SMART ANK_2a 41 70 IPR002110 GO:0005515
Lsi08g00846 456 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lsi08g00846 456 SMART ANK_2a 203 237 IPR002110 GO:0005515
Lsi08g00846 456 PANTHER - 8 382 - -
Lsi08g00846 456 Pfam Ankyrin repeats (3 copies) 103 166 IPR002110 GO:0005515
Lsi08g00846 456 Pfam Ankyrin repeats (3 copies) 12 97 IPR002110 GO:0005515
Lsi08g00846 456 PANTHER CASKIN 8 382 - -
Lsi08g00846 456 SUPERFAMILY Ankyrin repeat 10 214 IPR036770 -
Lsi08g00846 456 ProSiteProfiles Ankyrin repeat profile. 109 131 IPR002110 GO:0005515
Lsi08g00846 456 ProSiteProfiles Ankyrin repeat region circular profile. 109 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00846 - - - bhj:120075898 575.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00606 Lsi-Chr7:6502906 Lsi08g00846 Lsi-Chr8:16892001 5.78E-19 dispersed
Lsi08g00846 Lsi-Chr8:16892001 Lsi08g00848 Lsi-Chr8:16907764 0 dispersed
Lsi08g00849 Lsi-Chr8:16917774 Lsi08g00846 Lsi-Chr8:16892001 8.17E-19 dispersed
Lsi08g00844 Lsi-Chr8:16875442 Lsi08g00846 Lsi-Chr8:16892001 1.21E-17 proximal
Lsi08g00845 Lsi-Chr8:16880791 Lsi08g00846 Lsi-Chr8:16892001 9.18E-105 tandem
Lsi08g00846 Lsi-Chr8:16892001 Lsi08g00847 Lsi-Chr8:16902088 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00846 Lsi_Chr08 FPKM 25.745655 27.477716 21.502609 21.549685 57.289898 54.473175 58.001301 22.104242 20.165459 21.253637