Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00848 ATGGCAGAGATCAGTAGAAGAAAGAGGCTTGAAGAAGCCGCCATTGAAGGAAACGTAACAACATTGTTAGAGTTACTCCAACAAGATCCAATGCTACTTGCCAGACTCAACCTCAACGATTTCACCGAGACTCCTCTGCACGTGGCTGCTCTTCTCGGTCACGTGACATTTGTCGATGAGATTCTCAAGCGAAGGCCTCAGCTGGCTAAAGACTTGGATTCTCGCCGTTGTTCCGCCCTCCACTTGGCCGCCGCCGAAGGGTTCTTAGAAATTGTGAAAATTCTGGTGAGAGTTGATCCTGATATGTGTTCTATCTGCAATGAAGATGGCCGGAATCCTATTCATCTCGCCGCCGTCAGAGGCCGGGTTGATGTCTTGGCCGAGCTCGTTCGAGTCAGACCGGCAGCCGCTCGAACTGCCGTGGACGGCGGCGGAACGGTGTTGCATTTATGTGTGAAGTACAACCAGTTGGAGGCTCTGAAGATGTTGATTGAAACTCTGGGATCGAAAGACAAAGACAATGGTTTTATTAATTCTGAGGATGATTATGGGTTCACTATCCTTCATTTAGCAGTCTCCAACAAACAACTTCAGACGGTAGAATATCTAGTCAACCATACTGCAATCGAAGTAAATGCAAAAACCTCGAATGGATTAACAGCTCTGGACATTCTATCTCAAAGTCATAGAGATTTAAAGGACTTGGACATTGCAGAGACTCTCACAGCCGCAGATGCCGTCCGAACCGTAAACAAAAAACCGACGTCGTCACCACCGTCATCACCACTGCCACCCTTGTCTTCTGATGTCAAGAAAAACAAAAAGACTAGGCAAACATTCAGATGGTTTTTTTCGGCCTTATTCCACAATGGGGATTGGTGGTTTTTGAACGAAAAAAGCGAGTGGTTAATGAAGCAAGAATCATTAATGGTTGTAGCATCCCTAATTGCAACAATGGCTTTTCAAGCTGGAATGAACCCTCCCGGTGGCATTTGGCAAGACGATACTGCGTCGGGAAATCCAAGACAGACGGCCGGAACGTCGGTAATGGCCGGAAAAGACAAAGCAACATACAATAAATATCTTGTGTCTAACACAATAGGGTTCATGACTTCATTCCTTGCAATTGTGATGATTCTTATTGGGTTGCCTAAGAAACGTATTTTCATGAGGGTTTTGATCATGACAATGTGTGCTGCTGTGAGTTCCATGGCTTTCACTTATGGATATTCCATAAGGTTTTTCACTCCATTACCACCAAATGCAGCCTCCAACTCCAATTCTCCGGCTCCATCCCCATCCCCACAACTTTTTGGAGGTTCTATCTTAGGTACTCCGCGGCCGAAGTCAGACTCCGTCATCTCTTGGATTTCGATTATTGTCGCCATAGTGGTGACTTCTTCCATGGTGCTTTTCTTGGTCGGGAAGCTCTTCTACGTTCATTCTCGACAGAATAAATCTACTAAACAACCAGTTCCTCCGCTATGA 1488 45.83 MAEISRRKRLEEAAIEGNVTTLLELLQQDPMLLARLNLNDFTETPLHVAALLGHVTFVDEILKRRPQLAKDLDSRRCSALHLAAAEGFLEIVKILVRVDPDMCSICNEDGRNPIHLAAVRGRVDVLAELVRVRPAAARTAVDGGGTVLHLCVKYNQLEALKMLIETLGSKDKDNGFINSEDDYGFTILHLAVSNKQLQTVEYLVNHTAIEVNAKTSNGLTALDILSQSHRDLKDLDIAETLTAADAVRTVNKKPTSSPPSSPLPPLSSDVKKNKKTRQTFRWFFSALFHNGDWWFLNEKSEWLMKQESLMVVASLIATMAFQAGMNPPGGIWQDDTASGNPRQTAGTSVMAGKDKATYNKYLVSNTIGFMTSFLAIVMILIGLPKKRIFMRVLIMTMCAAVSSMAFTYGYSIRFFTPLPPNAASNSNSPAPSPSPQLFGGSILGTPRPKSDSVISWISIIVAIVVTSSMVLFLVGKLFYVHSRQNKSTKQPVPPL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16907764 16910608 - Lsi08G008480.1 Lsi08g00848 668774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00848 495 MobiDBLite consensus disorder prediction 248 272 - -
Lsi08g00848 495 Gene3D - 2 261 IPR036770 -
Lsi08g00848 495 PANTHER - 8 417 - -
Lsi08g00848 495 Pfam Ankyrin repeat 183 215 IPR002110 GO:0005515
Lsi08g00848 495 SMART ANK_2a 109 138 IPR002110 GO:0005515
Lsi08g00848 495 SMART ANK_2a 41 70 IPR002110 GO:0005515
Lsi08g00848 495 SMART ANK_2a 143 172 IPR002110 GO:0005515
Lsi08g00848 495 SMART ANK_2a 183 213 IPR002110 GO:0005515
Lsi08g00848 495 SMART ANK_2a 217 252 IPR002110 GO:0005515
Lsi08g00848 495 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lsi08g00848 495 PANTHER CASKIN 8 417 - -
Lsi08g00848 495 Pfam Domain of unknown function 305 412 IPR026961 -
Lsi08g00848 495 ProSiteProfiles Ankyrin repeat profile. 109 131 IPR002110 GO:0005515
Lsi08g00848 495 ProSiteProfiles Ankyrin repeat region circular profile. 109 131 - -
Lsi08g00848 495 Pfam Ankyrin repeats (3 copies) 80 168 IPR002110 GO:0005515
Lsi08g00848 495 SUPERFAMILY Ankyrin repeat 10 228 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00848 - - - bhj:120075898 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00026 Lsi-Chr5:422123 Lsi08g00848 Lsi-Chr8:16907764 5.49E-06 dispersed
Lsi07g00607 Lsi-Chr7:6513241 Lsi08g00848 Lsi-Chr8:16907764 2.27E-27 dispersed
Lsi08g00846 Lsi-Chr8:16892001 Lsi08g00848 Lsi-Chr8:16907764 0 dispersed
Lsi08g00848 Lsi-Chr8:16907764 Lsi07g00605 Lsi-Chr7:6493807 2.58E-30 dispersed
Lsi08g00850 Lsi-Chr8:16924109 Lsi08g00848 Lsi-Chr8:16907764 4.70E-18 dispersed
Lsi08g00848 Lsi-Chr8:16907764 Lsi08g00851 Lsi-Chr8:16931944 3.32E-55 proximal
Lsi08g00847 Lsi-Chr8:16902088 Lsi08g00848 Lsi-Chr8:16907764 0 tandem
Lsi08g00848 Lsi-Chr8:16907764 Lsi08g00849 Lsi-Chr8:16917774 1.24E-19 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00848 Lsi_Chr08 FPKM 9.390656 9.099914 12.138082 11.982482 19.634857 24.18647 22.334934 15.327125 14.114468 15.602244