Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00852 ATGTCTTACAATAGTAACCAGCATCTCACTACGTCGGAGAGCGATCTTTCCGAGCAGCCGGGGTTCGAGTTTACGGACTGGATGTTCGATGGATGGCTGAACGAAAACTCTACGTCTCTGGCCGACTCGTTGATGTACCCGGTTTATCAAGAGGGGGAGGTTGATGAATTTGTTGGGAACGCCATTCAGCAAGGAGAGCCTAGCAGCAGAGACAATGGGAGAGAGAGGGAAGTTAGAGAAAGATTTGCATTCAAGACAAAATCAGAAGTTGAGATTCTGGATGATGGTTTCAAGTGGAGGAAATATGGGAAGAAGATGGTGAAGAACAGCCCAAATCCAAGGAACTACTACAAATGCTCGGTCGAAGGCTGCCCGGTGAAGAAAAGAGTCGAAAGAGATCGAGAGGATCCGAAATACGTGATAACAACATACGAGGGTGTTCATACTCATGAAACATCTTGA 462 46.54 MSYNSNQHLTTSESDLSEQPGFEFTDWMFDGWLNENSTSLADSLMYPVYQEGEVDEFVGNAIQQGEPSSRDNGREREVRERFAFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVEGCPVKKRVERDREDPKYVITTYEGVHTHETS 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16950503 16951655 + Lsi08G008520.1 Lsi08g00852 668778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00852 153 Pfam WRKY DNA -binding domain 94 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi08g00852 153 Gene3D WRKY domain 80 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi08g00852 153 SUPERFAMILY WRKY DNA-binding domain 86 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi08g00852 153 ProSiteProfiles WRKY domain profile. 88 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi08g00852 153 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 152 IPR044810 GO:0003700
Lsi08g00852 153 PANTHER WRKY TRANSCRIPTION FACTOR 59-RELATED 25 152 - -
Lsi08g00852 153 SMART WRKY_cls 93 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00852 - - - csv:101203573 313.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00852 Lsi-Chr8:16950503 Lsi08g00885 Lsi-Chr8:17234479 1.03E-30 dispersed
Lsi10g00672 Lsi-Chr10:9336487 Lsi08g00852 Lsi-Chr8:16950503 3.01E-15 dispersed
Lsi08g00852 Lsi-Chr8:16950503 Lsi11g01628 Lsi-Chr11:24630520 9.48E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g123 . . . . . . . . Cmo05g00435 . . Cma05g00418 . Car12g00603 Sed11g0865 Cpe07g00570 . Bhi04g01492 Tan02g1607 Cmetu03g0494 . Hepe08g1410 . Lcy13g2200 . . . . . . . . . Cone17ag0938 Cone20ag0281 . . . . . . . Bda13g01591 Bpe14g00273 . . . . . . . Cma12g00655 . Car05g00356 . . . . . . . . . Cla08g01001 Cam08g1451 Cec08g1027 Cco08g1151 Clacu08g1152 . Cre08g0937 Lsi08g00852 . Chy03g00670 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001629 2 5 0 0 2 2 3 2 2 2 2 2 3 2 2 3 2 3 4 2 2 2 2 2 1 2 2 3 5 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25767 PF03106 WRKY 4.10E-25 CL0274 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00852 Lsi_Chr08 FPKM 40.367947 42.65287 42.240898 43.412735 25.976542 26.901043 28.080538 30.352016 30.971622 33.609528