Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00854 ATGGAGGAAATGTCCCCAGCGGTTGTGGTGCCATTTAGGGTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACCCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGACTGAAGTAGGTTCTGATGATTGTAAGAGTACTAATGGGGAGGAAGAGGTTGGTATTACTACGGTTTCAGTAACAAATGACAAGTGTGAAGGAGTCCCATTGTCAGTTGTGTTATCTCAAAATAAAAGCAATTGGGTTGGGGCAGATGAGTCGATATCCCATGGAAGTGAGGAAGATGATTCTTTATCTTTCGAGGGCGAGCACATTTATGATAGCTCTTGTTCACATTCAGTGATTAGTGAGAATAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGATTCCATCAGCAATGCAAAGGATATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAGACTAATGTTGAAAGTCTTGATACTCAGATTGCGAGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGATGGGCTAGGCACTGAAGCATGTAATAACATGATTTTTCAGCTGCCTCTTGAGAAAAGGGCAAGCGAACCAGTCAGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCCCTTTGGGGATTTACATCGGTCTGTGGAAGAAGACCTGAGATGGAAGATGCAGTGGCAACTGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGAGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACTGTTCATTTTTTTGGAGTTTATGATGGTCACGGTGGCTCTCAGGTCGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGAAATAGCTGTTGGCAATATGAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAAATGTTTTCTAAAAGTTGATGCTGAAATTGGAGGGGGACCTGGTGTTGAGCCTGTTGCGCCGGAAACTGTTGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAATTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCATTGGCATTGTCTGTGGATCATAAACCAAACAGAGAAGATGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGGCATCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATCGGTGATAGATACTTGAAACCATGGATCATCCCAGAGCCAGAAGTGATGTTCCTCCCTCGGGCGAAAGACGACGAATGCCTCGTTCTAGCGAGTGACGGTTTATGGGATGTGATGACAAATGAAGAGGTATGCGACCTGGCTCGAAAACGAATCCTACTCTGGCACAAGAAGAATGGCGTCAGTTTGCCTTCTGAGAGGGGGATGGGGATCGATCCCGCAGCCCAAGCGGCCGCAGAATACCTCTCAAATCGAGCTCTTCAAAAGGGCAGCAAAGACAACATCACAGCGCGAGGACAAGAAGCGATTTCGTTGGCCGAGAAATTTCCAAGAACCGCCGCGTCGTTCAGGCCGCTGTTGCTTCGCCGACGGCCGTTTGATGGAGTGGTAATACCTCAATCAATGGGCATCAAGAGAGAGAGTAAAAGCTCCGCTTCTGCAACATCACCGTGCGCTGATCTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGTTTGTAAAAGGTCATTGGGATGAAGAACCCTGCGTCTCCGAGTGGCAGAAGTACAGAGCTTGCCTCTCCGAGCATTTGGATGATAAGAAGTTGAAGCGTTTCTTGGAAGAGGAAACACTTGTTCATTCCTCCATGAAAGCTGATGGGAGTTAA 1983 45.69 MEEMSPAVVVPFRVGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLTEVGSDDCKSTNGEEEVGITTVSVTNDKCEGVPLSVVLSQNKSNWVGADESISHGSEEDDSLSFEGEHIYDSSCSHSVISENSSICGDDFLGSEVSSFEAFDSISNAKDISSVEIAAKANIEETNVESLDTQIASSSSAAASLEEDVGDGLGTEACNNMIFQLPLEKRASEPVSRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQEIAVGNMKDNCQELWRKAFTKCFLKVDAEIGGGPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPLALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLVLASDGLWDVMTNEEVCDLARKRILLWHKKNGVSLPSERGMGIDPAAQAAAEYLSNRALQKGSKDNITARGQEAISLAEKFPRTAASFRPLLLRRRPFDGVVIPQSMGIKRESKSSASATSPCADLRAAYHNCFNRWYSEKFVKGHWDEEPCVSEWQKYRACLSEHLDDKKLKRFLEEETLVHSSMKADGS 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16959074 16970415 - Lsi08G008540.1 Lsi08g00854 668780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00854 660 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Lsi08g00854 660 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
Lsi08g00854 660 SMART PP2C_4 229 541 IPR001932 -
Lsi08g00854 660 PANTHER ALPHABET, ISOFORM E-RELATED 121 537 - -
Lsi08g00854 660 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 589 639 - -
Lsi08g00854 660 CDD PP2Cc 241 538 IPR001932 -
Lsi08g00854 660 SUPERFAMILY PP2C-like 234 538 IPR036457 -
Lsi08g00854 660 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 121 537 - -
Lsi08g00854 660 Pfam Protein phosphatase 2C 268 536 IPR001932 -
Lsi08g00854 660 Pfam Uncharacterised protein family (UPF0203) 587 648 IPR007918 -
Lsi08g00854 660 Gene3D - 226 539 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00587 Lsi-Chr7:6239778 Lsi08g00854 Lsi-Chr8:16959074 4.19E-175 dispersed
Lsi08g00854 Lsi-Chr8:16959074 Lsi04g01361 Lsi-Chr4:21361522 1.65E-38 dispersed
Lsi08g00854 Lsi-Chr8:16959074 Lsi02g01331 Lsi-Chr2:17811663 1.52E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00854 K14497 - csv:101207918 1002.28