Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00856 ATGTCTCCCTCCTCGTATCCACCCGAAGATGGGATTCCATTGAACACCACGGCGGTGGCCATTGACAAGGATAAAAACAGCCAACACGCCGTCCGCTGGGCTATAGATCATCTGGTCATTAGCAACCCACTTATCATTCTCATCCATGTTAGGCATAAAGCTAATCAACATCAGGGAGCGAGCGATTCTGAAAATGGTGAAACTGATGCCCAGCAGCTGTTTGTTCCTTATCGTGGATACTGTGCTCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATACTGATATTCCCAAAGCGCTTGTTGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTTGGAGCTTCAACCAGGAGTGCTTTAGCAAGGAAATTTAAAGGTCCTGATGTTCCAACCAGCATAATAAAAACTGCCCCAGAATTTTGTTCTGTTTATGTAATATCCAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGGCAGTGGCTAATACTGCCATGCCACCAAGACAACCGTCGCCGCTTGGAGTTCAGCCAAATGTTCAACCAGACAGCAGCAACGAACCAGAAAATGGCGCCAAAGGGCAACCAGCAAAGGAAGGATGGAAAAGTGCAGGTACAGAGAGAATGCTCGCTGAAAGGAATGCTGGTGCAAAACCAGCAAAAGCATTGACCCGTGAGAGGCCAAAAACTTCTCCGAGTAATATATCATTGGAAAATATAGAGGCTCCAAATCGAGGGTCTAGGTCTTCATTTAGTCGTGATTCGATATCTGATGACAATATGATGACTGCACAGATGCCTTATGGTTCAATGGACGTGACTGCTCAAAATTTAGATTTCAGTGTTAGCACAAATTTGTCAGTGGACTCTGCTTCCGCACAATCTACTCGGGAACTAGAGGCTGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCGAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGCTGCTCTCGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCTGAAAGAGAAGCTCAGAGAAGAAAACAGGCTGAAATGAAAGCCAGACGAGAGGCAGAAGAGAAAAAACGAGCATTGAATGCTCTAGCTCAGAATGACGTCCGATATAGAAAATACACTATAGAGGAGATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATATGGTCCTGTTTATGGTGGCAAACTTGATCATACAGCTGTTGCAATTAAAGTTTTAAGACCTGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAAGTCCTCTGTTGTATTAGACATCCAAACATGGTCCTTCTTCTTGGGGCATGCCCCGAGTATGGTTGCTTGGTATATGAATACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATAGCTGCTGAAATTGCAACCGCACTCCTTTTCCTTCACCAAGCAAAGCCAGAACCGCTTGTGCATAGGGACCTTAAACCAGCTAACATTCTCCTGGACCGCAATTTTGTGAGCAAAATCAGTGATGTTGGCCTAGCCCGATTAGTCCCACCTTCTGTAGCTGATCAAGTCACACAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCTGAGTACCAACAAACAGGGAAGTTAACGACAAAATCAGATATTTACTCGTTTGGAATAATGTTACTTCAAATTATTACTGCCAAGCCTCCAATGGGTTTGGCTCACCATGTGCAAAGGGCTATTGAGAAGGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTGCAAACTTGGCATTGAAGTGTGCTGAACTGAGGAAGAGAGATAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGACATTGGGAGGAGTTCTGACAAACGTGAAAGCCGAAATAACTTTCCACGCTCTGCTGCATCAAGTTCCAGTTCAAGGCCGCAGTCATCAAATGAGGTCCACAACTTGTTTAAGATTCCAGAATTAGTTATACTGATGAAGGAAGTTAGAGGCCTGCGTATGACAATGGTGACGGTATACAAAAGACCGGCTAACCCAGAAGAGGAAAGTAGAGAGTTATGGCTGATCCTATCAACTGCTAAAACTCGCTCCAGGAGTAAAGTAACCAACTCCAAAAGTTATATTGGATTACATCAATCAAGAAAGAAAAAAAACACCATTGTAAATTCATAA 2436 44.01 MSPSSYPPEDGIPLNTTAVAIDKDKNSQHAVRWAIDHLVISNPLIILIHVRHKANQHQGASDSENGETDAQQLFVPYRGYCARKGVQLKEVVLDDTDIPKALVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSIIKTAPEFCSVYVISKGKIISARAALRAVANTAMPPRQPSPLGVQPNVQPDSSNEPENGAKGQPAKEGWKSAGTERMLAERNAGAKPAKALTRERPKTSPSNISLENIEAPNRGSRSSFSRDSISDDNMMTAQMPYGSMDVTAQNLDFSVSTNLSVDSASAQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALNALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFANLALKCAELRKRDRPDLGTVIVPELNRLRDIGRSSDKRESRNNFPRSAASSSSSRPQSSNEVHNLFKIPELVILMKEVRGLRMTMVTVYKRPANPEEESRELWLILSTAKTRSRSKVTNSKSYIGLHQSRKKKNTIVNS 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16978567 16983193 + Lsi08G008560.1 Lsi08g00856 668782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00856 811 CDD STKc_IRAK 440 700 - -
Lsi08g00856 811 MobiDBLite consensus disorder prediction 231 260 - -
Lsi08g00856 811 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Lsi08g00856 811 Coils Coil 300 320 - -
Lsi08g00856 811 SUPERFAMILY Protein kinase-like (PK-like) 417 692 IPR011009 -
Lsi08g00856 811 MobiDBLite consensus disorder prediction 704 733 - -
Lsi08g00856 811 Gene3D Transferase(Phosphotransferase) domain 1 507 724 - -
Lsi08g00856 811 ProSiteProfiles Protein kinase domain profile. 434 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00856 811 Gene3D Phosphorylase Kinase; domain 1 403 506 - -
Lsi08g00856 811 SMART serkin_6 434 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00856 811 MobiDBLite consensus disorder prediction 169 260 - -
Lsi08g00856 811 Pfam Universal stress protein family 19 147 IPR006016 -
Lsi08g00856 811 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 727 - -
Lsi08g00856 811 MobiDBLite consensus disorder prediction 180 195 - -
Lsi08g00856 811 MobiDBLite consensus disorder prediction 716 733 - -
Lsi08g00856 811 Pfam Protein tyrosine and serine/threonine kinase 438 692 IPR001245 GO:0004672|GO:0006468
Lsi08g00856 811 Gene3D HUPs 14 152 IPR014729 -
Lsi08g00856 811 Coils Coil 360 415 - -
Lsi08g00856 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Lsi08g00856 811 PANTHER OS02G0152300 PROTEIN 16 727 - -
Lsi08g00856 811 CDD STK_N 16 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02918 Lsi-Chr2:35416813 Lsi08g00856 Lsi-Chr8:16978567 0 dispersed
Lsi04g02207 Lsi-Chr4:29113287 Lsi08g00856 Lsi-Chr8:16978567 0 dispersed
Lsi08g00856 Lsi-Chr8:16978567 Lsi11g01167 Lsi-Chr11:20180516 0 dispersed
Lsi08g00856 Lsi-Chr8:16978567 Lsi08g01117 Lsi-Chr8:19813869 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83845 PF07714 PK_Tyr_Ser-Thr 2.30E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00856 - - csv:101203326 1235.71