Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00862 ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 52.96 MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17035733 17036155 + Lsi08G008620.1 Lsi08g00862 668788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00862 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Lsi08g00862 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Lsi08g00862 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 129 - -
Lsi08g00862 140 SUPERFAMILY Histone-fold 14 88 IPR009072 GO:0046982
Lsi08g00862 140 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 2 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00862 Lsi-Chr8:17035733 Lsi10g01125 Lsi-Chr10:15493505 1.03E-09 dispersed
Lsi08g00862 Lsi-Chr8:17035733 Lsi06g01644 Lsi-Chr6:26741318 9.93E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25768 PF00808 CBFD_NFYB_HMF 1.80E-19 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00862 - - cmo:103488501 250.366