Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00877 | ATGCAACCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTACCACCACCACAGCACGACCCGGCGGCACACCAGCAGCATCAGCATCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTATAACATATTTGGTAACATCTTCGAAGTTACGGCCAAGTACAAGCCTCCTATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGGTCTATCATCTATGCGATCCCTTTTTTTTTCTTTTCCCTGCGGTTTGATTGTTTCAGTTCTGCTCTCAACTCCGAGACGAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGATAACAAGATCGATGCTAAGAGAACTCTTCGCGAGATCAAGCTTCTTCGGCATATGGATCATGAAAACGGAAATTCTAGAGTCTGTAGTCTCCACAGTGAGTCAAAAACCAAGCCATTCCACATAGCTGGCCATGCTACTTCCCCTAATGAGATGAGGATTGTTGTTGCAATTAGGGATATCATACCTCCGCCTCTAAGGGAAACATTTAATGATGTTTATATAGCATATGAGCTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCATTGTCAGTATTTCCTATACCAGATTCTCCGTGGATTGAAGTACATACATTCAGCTAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATTTGTGATTTCGGACTTGCTCGTGTTACTTCTGAAACTGACTTTATGACAGAATATGTGGTTACAAGATGGTACCGTGCCCCAGAGCTCTTACTTAATTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGAGATCATGTGCATCAGTTGCGCTTGCTTTTGGAGCTGATTGGCACTCCATCAGAGGCTGATCTCGGTTTTTTGAACGAGAATGCTAAAAGATACATACGGCAACTACCTCATTACCATCGTCAGTCATTCACTGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGACGCTCTAGCTCATCCTTATTTGACTTCATTGCATGACATTAGTGATGAGCCTGTCTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCATGCACTTACCGAGGAACAGATGAAAGAGCTGATCCATCTAGAAGCGCTTGCATTTAACCCCGAACAGAGGCCTTCTGAAAACTCTTTGATCCTTGGGGGTGATGGCAGTGAAGCCAATGACACCAGGTTCACATCAATGATAACGCTCGAGTTACCTCGATCACCATCTAGGTTGTTTTCGGATTCGAACTCATGCTTGTATCATCGTTGCTACTGCCACTGTTGCAACTGTAACCGTCGAGATTTGATTGATCTTATAACAAGATCGCTAATTTGTGTGACGTGGAGAAATATTTATAAAAGGAGAGCCTGCATTGCTAGCGTGACCAAGAAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAATAATAATGGAGATAGGCGAAGATCCACATATCATAGTGTTTCCATTTCCATCACAAGGCCACATAAATCCTCAGCTTCAATTCGCAAAACGCCTAATCGCAAACGGAATCAAGGTAACATTACTCACAACTTTACATGTTAGCCAACACTTGAAATTGCAGGGCGATTATTCCAATTCAGTGAAGATCGAAATCATTTCCGATGGCTCTGAGAATCGTCAAGAAACCGATACCATGCGCCAAACTCTGGATCGATTTCGGGACAAAATGACCAAAAACTTGGAAAATTACTTGCAAAAAGCCATGAATGCTTCAAATCCACCTCGATTTATTCTGTACGATTCCACAATGCCTTGGGTTTTGGAAGTCGCGAAGGAGTTCGGACTCGCTAGGGCTCCGGTTTACACTCAATCTTGTGCCCTAAATAGTATAAATTATCATGTTCTTCATGGTCAATTGAAACTTCCTCCTGAATCCTCTACTATTTCGTTGCCTTCTATGCCTCTGCTTTCCCCTAATGATCTCCCTGCTTATGATTATGATCCTGCATCCGTTGATACCATCATCGATCTTCTTACTAGTCAATATTCTAATATTGAAGATGCGGATCTGCTTTTCTGCAACACTTTTGACAAATTGGAAGGGGAGATTATCAAATGGATGGAGAGCTGGGGGAGGCCAGTGAAAACCATAGGACCAACTATTCCATCAGCATACTTAGACAACAGAGTAGAGAATGACAAGTTCTATGGGTTAAGCCTGTTTGAGCCCAACCAAGATAACTGTCTAAAATGGCTACACACCAAGCCTCCTGCTTCTGTTCTCTATATCTCTTATGGAAGTTTAGTAGAAATGGGAGAAGAACAGCTCAAAAACTTAGCTCTTGGAATCAAAGAAACTGGCAAATTCTTCTTGTGGGTTGTTAGAGACACAGAAGCTCAGAAGCTTCCCCCAAACTTTATAGAAAGTGTTGGGGATAAAGGTCTTGTAGTCAGCTGGTGCTCGCAGCTCGAGGTTTTAGCTCACCCGGCGATCGGTTGCTTCTTTACACATTGCGGTTGGAACTCGACGCTCGAGGCGCTGTGCTTGGGCGTCCCGGTTGTGGCTTTCCCACAGTGGGCTGATCAGGTGACTAATGCTAAGTTTTTGGAAGATGTTTGGAAAATTGGGAAGAGAGTGAAGGTGAATGAGAAGAGGTTGGCAAGTCAAGAAGAGATAAGGAGTTGCATTTGTGAAGTGATGGAAGGAGAGAGAGCTAATGAGTTTAAGAACAATTCATTAGAATGGAAGAAATGGGCAAAAGAAGCCATGGAGGAAGAATATTCTCTAAATCGAATCAATTATTCGACGCCGGCGAGAATGGAAAAGACAACGGCAAACGGCGGAAGGAGATCAAGCCATGTGGTGGTGTTTGCTTATCCAAAGCACGGCCATATGAGTCCAATGCTTCAATTTGCTAAGCGATTGGCTTCTAAAGGCCTTCGAGTAACATTTCTCACCACTTCCTCTGCAACTCAATCTCTCCAAATCAATCTTCCTCACTCCTATCAAATCGATCTTCAATTCATCTCCGACGTCCGTACCGAAGCCATTCTGTCTCTGAAGGACGAGCATGATAGCTTCGAGGCCGTCGTTTCGAGGTCGTTTGGGGATTTCATTGACGGAGCCCTAATCGATCCTCTTCCTCTGAGATTCTTCGTGGTTTTCGATTCTGTTATGCCTTGGGCAATGGATGTGGCTACAGAGCGAGGGCTGGATTCGGCGCCGTTTTTCACTGAATCTTGTGCCGTTAATCACATTCTGAATCAGGTCTATGAAGGTTCGTTGAATTTGAGCAATGTTCCTCCGGCGGCGGCGGTTTCGATTCCGTCACTTCCGGTTCTTCAAGCCGAGGATCTGCCGTTTTTCCCTTACGAGCCAGAAGTGGTAATGAAATTCATGATTAGGCAATTTTCGAGTTTCAAGAACGCGAAATGGATTTTCGTCAACACTTTTGATCAGCTTGAGATGAAGTTGGAGGATGACAAAAGCTATGGCCTAAAGCACTTAAAAATGGAAAATGGCAAAATTTTGGAATGGTTAGACACAAAAGAAAGTGGTTCAGTCATTTACATTTCATTTGGAAGTTTGGTTATTTTACCACAACAACAAGTGGATGAACTAAGCAATTTCCTCAAACACATTACTACAAATCTTTCTTTCTTATGGGTCTTAAGAGAATCAGAAATGGCAAAACTTCCCAACAACTTTGTTCAACAAACATCACATAGAGGCTTAGTTGTCAATTGGTGTTGTCAACTTCAAGTTCTCTCCCACAATGCTATAGGTTGTTTCGTCACGCACTGCGGTTGGAATTCGACGATCGAAGCCTTGAGCCTGGGAGTACCGATGGTCGCTGTTCCGCAGTGGATCGATCAAACGACGAACGCTAAGTTCGTTGCGGATGTTTGGGAAGTTGGAGTTAGGGTGAAGATTAGTAATGAGAAAGGGATTGCAACAAAGGAAGAATTAGAAGGCTCTATTCAAAAGGTTTTTGGAGGAGATGGGAAGAATAAGATTAAAAGTAATTCAATCAAATTGAGGAAACTTGCTAAAGAAGCTATGGATGAAGGTGGTAGCTCTGATAAAAACATTCAAGAATTTGTTGACTCAATTATTTCATCCATCAGCAGCACCACCACCACCACCGCCATTCTCATCTCCGACAAAAAGCCGTCGGAAATGGAGAAGACGACGGAGAAGGGAGGAGGAAGAAGAAAAAGAAGAATGGAACAGAATCATGTAATCGTTTTCGCTTTCCCAAGGCACGGCCACATGAGCCCAATGCTCCAATTCTCGAAGCGATTAATCTCCAAAGGCCTTCTCCTCACATTCCTCACCACTTCCTCTGCATCTCAATCCCTAGTTCTCAATCTCCCATCCTCTCCCTCTTTCCACCTCAAAATCATCTCCGATGTCCCTGAATCCAACGATCTCGCCACTCTCCACGCCTATCTCCGGAGCTTCAGAGCCGCCGTCACCAAATCCTTGACCAATTTCATCGACCAAGCCTTAATTTCAAGTTCCGATGAAGAAGTTCCTCCTACTTTGATTGTTTACGATTCTGTTATGCCCTGGGTACAGAGTATCGCTGCAGAGCGAGGTCTTGATGCAGCTCCGTTTTTCACTCAATCCGCCGCCGTTAATCATATCCTCCATCTCGTCTATGGAGGATCTCTGAGTATTCCGCCGCCGCAGAATGTGACGGTTTCGCTTCCGACGGAGATTGTTCTTCAGCCAGGAGATCTGCCAGCGTTTCCTGATGATCCTGAAGTGGTTTTGGAGTTCATGACGAGTCAGTTCTCCAATTTGGAGAATGTTGTTAATTGGATGGCCAAAACATTGCCTATCAAGACAGTGGGACCAACCATTCCATCGGCATATCTAGACGGTCGGTTAGAGAATGACAAAGCCTACGGTTTGAATATCTCAAAATCCAACGGTGGGAAGAACCCCATCCAGTGGTTAGACTCAAAAGAAACTGCCTCAGTTGTTTATATTTCATTTGGAAGTTTGGTTATCTTACTTGAAGAACAAGTAAATGAACTGACAAATTTGCTTAGAGACACTGATTTTTCCTTCTTATGGGTCCTAAGAGAATCAGAATTTGAAAAGCTTCCTAACAACTTTATACAAGACACATCAGAACGTGGCCTAATTGTGAACTGGTGCAGTCAACTACAAGTTCTGTCTCATAAGGCTGTAAGTTGTTTTGTGACTCATTGTGGTTGGAACTCGACGCTTGAAGCGTTGAGCTTGGGGGTGCCAATGGTTGCAATCCCGCAGTGGGTCGATCAAACGACAAATGCAAAGTTTGTTGCAGATGTTTGGGAAGCCGGAGTTCGTGTGAAGAAGAATGAGAAAGGGGTTGCTACAAAGGAAGAACTAGAAGCCTCCATCAGGAAGGTTGTTGTTCAAGGAGAAAAGCCAAATGAATTTAAACAAAACTCAATCAAGTGGAAGGAATTGGCTAAAGAAGCTGTGGATGAAGGAGGCAGTTCTGATAAACACATTGAAGAATTTGTCCAAGCAATTGTTGCATCAAATAAGTCATTCCAAACAAGCTTAAAATCATTAGCTAAATCTAAACATTCATTCCTTTGCAACAACAACGACTTGTTTGCCTATGTTGCGACCCGACAAGATGCCGATGAGAGCGGATGGACCATTCTCAAGGCCATAAGCTAA | 5868 | 43.78 | MQPDDTVMSEAASVPPPQHDPAAHQQHQHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVWSIIYAIPFFFFSLRFDCFSSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENGNSRVCSLHSESKTKPFHIAGHATSPNEMRIVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIHLEALAFNPEQRPSENSLILGGDGSEANDTRFTSMITLELPRSPSRLFSDSNSCLYHRCYCHCCNCNRRDLIDLITRSLICVTWRNIYKRRACIASVTKKKKKEEEEEEEEEIIMEIGEDPHIIVFPFPSQGHINPQLQFAKRLIANGIKVTLLTTLHVSQHLKLQGDYSNSVKIEIISDGSENRQETDTMRQTLDRFRDKMTKNLENYLQKAMNASNPPRFILYDSTMPWVLEVAKEFGLARAPVYTQSCALNSINYHVLHGQLKLPPESSTISLPSMPLLSPNDLPAYDYDPASVDTIIDLLTSQYSNIEDADLLFCNTFDKLEGEIIKWMESWGRPVKTIGPTIPSAYLDNRVENDKFYGLSLFEPNQDNCLKWLHTKPPASVLYISYGSLVEMGEEQLKNLALGIKETGKFFLWVVRDTEAQKLPPNFIESVGDKGLVVSWCSQLEVLAHPAIGCFFTHCGWNSTLEALCLGVPVVAFPQWADQVTNAKFLEDVWKIGKRVKVNEKRLASQEEIRSCICEVMEGERANEFKNNSLEWKKWAKEAMEEEYSLNRINYSTPARMEKTTANGGRRSSHVVVFAYPKHGHMSPMLQFAKRLASKGLRVTFLTTSSATQSLQINLPHSYQIDLQFISDVRTEAILSLKDEHDSFEAVVSRSFGDFIDGALIDPLPLRFFVVFDSVMPWAMDVATERGLDSAPFFTESCAVNHILNQVYEGSLNLSNVPPAAAVSIPSLPVLQAEDLPFFPYEPEVVMKFMIRQFSSFKNAKWIFVNTFDQLEMKLEDDKSYGLKHLKMENGKILEWLDTKESGSVIYISFGSLVILPQQQVDELSNFLKHITTNLSFLWVLRESEMAKLPNNFVQQTSHRGLVVNWCCQLQVLSHNAIGCFVTHCGWNSTIEALSLGVPMVAVPQWIDQTTNAKFVADVWEVGVRVKISNEKGIATKEELEGSIQKVFGGDGKNKIKSNSIKLRKLAKEAMDEGGSSDKNIQEFVDSIISSISSTTTTTAILISDKKPSEMEKTTEKGGGRRKRRMEQNHVIVFAFPRHGHMSPMLQFSKRLISKGLLLTFLTTSSASQSLVLNLPSSPSFHLKIISDVPESNDLATLHAYLRSFRAAVTKSLTNFIDQALISSSDEEVPPTLIVYDSVMPWVQSIAAERGLDAAPFFTQSAAVNHILHLVYGGSLSIPPPQNVTVSLPTEIVLQPGDLPAFPDDPEVVLEFMTSQFSNLENVVNWMAKTLPIKTVGPTIPSAYLDGRLENDKAYGLNISKSNGGKNPIQWLDSKETASVVYISFGSLVILLEEQVNELTNLLRDTDFSFLWVLRESEFEKLPNNFIQDTSERGLIVNWCSQLQVLSHKAVSCFVTHCGWNSTLEALSLGVPMVAIPQWVDQTTNAKFVADVWEAGVRVKKNEKGVATKEELEASIRKVVVQGEKPNEFKQNSIKWKELAKEAVDEGGSSDKHIEEFVQAIVASNKSFQTSLKSLAKSKHSFLCNNNDLFAYVATRQDADESGWTILKAIS | 1955 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 17123544 | 17158440 | + | Lsi08G008770.1 | Lsi08g00877 | 668803 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00877 | 1955 | CDD | GT1_Gtf-like | 1014 | 1421 | IPR002213 | GO:0008194 | |
Lsi08g00877 | 1955 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Lsi08g00877 | 1955 | Gene3D | Glycogen Phosphorylase B; | 1222 | 1413 | - | - | |
Lsi08g00877 | 1955 | Gene3D | Glycogen Phosphorylase B; | 796 | 982 | - | - | |
Lsi08g00877 | 1955 | Gene3D | Glycogen Phosphorylase B; | 1698 | 1886 | - | - | |
Lsi08g00877 | 1955 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
Lsi08g00877 | 1955 | PANTHER | GLYCOSYLTRANSFERASE | 557 | 990 | - | - | |
Lsi08g00877 | 1955 | Gene3D | Glycogen Phosphorylase B; | 560 | 988 | - | - | |
Lsi08g00877 | 1955 | CDD | GT1_Gtf-like | 556 | 986 | IPR002213 | GO:0008194 | |
Lsi08g00877 | 1955 | SUPERFAMILY | Protein kinase-like (PK-like) | 71 | 409 | IPR011009 | - | |
Lsi08g00877 | 1955 | Pfam | Protein kinase domain | 101 | 401 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00877 | 1955 | PANTHER | GLYCOSYLTRANSFERASE | 1472 | 1909 | - | - | |
Lsi08g00877 | 1955 | ProSitePatterns | UDP-glycosyltransferases signature. | 1783 | 1826 | IPR035595 | - | |
Lsi08g00877 | 1955 | Gene3D | Transferase(Phosphotransferase) domain 1 | 200 | 426 | - | - | |
Lsi08g00877 | 1955 | PANTHER | GLYCOSYLTRANSFERASE | 1013 | 1218 | - | - | |
Lsi08g00877 | 1955 | Gene3D | Glycogen Phosphorylase B; | 1002 | 1221 | - | - | |
Lsi08g00877 | 1955 | ProSiteProfiles | Protein kinase domain profile. | 66 | 401 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00877 | 1955 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 556 | 989 | - | - | |
Lsi08g00877 | 1955 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 238 | 250 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi08g00877 | 1955 | SMART | serkin_6 | 66 | 401 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi08g00877 | 1955 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 1013 | 1433 | - | - | |
Lsi08g00877 | 1955 | CDD | GT1_Gtf-like | 1474 | 1901 | IPR002213 | GO:0008194 | |
Lsi08g00877 | 1955 | ProSitePatterns | UDP-glycosyltransferases signature. | 1310 | 1353 | IPR035595 | - | |
Lsi08g00877 | 1955 | PANTHER | GLUCOSYL/GLUCURONOSYL TRANSFERASES | 1216 | 1435 | - | - | |
Lsi08g00877 | 1955 | PANTHER | GLUCOSYL/GLUCURONOSYL TRANSFERASES | 1013 | 1218 | - | - | |
Lsi08g00877 | 1955 | Coils | Coil | 535 | 555 | - | - | |
Lsi08g00877 | 1955 | ProSitePatterns | UDP-glycosyltransferases signature. | 880 | 923 | IPR035595 | - | |
Lsi08g00877 | 1955 | Gene3D | Glycogen Phosphorylase B; | 1477 | 1898 | - | - | |
Lsi08g00877 | 1955 | Gene3D | Phosphorylase Kinase; domain 1 | 69 | 433 | - | - | |
Lsi08g00877 | 1955 | PANTHER | GLUCOSYL/GLUCURONOSYL TRANSFERASES | 1472 | 1909 | - | - | |
Lsi08g00877 | 1955 | PANTHER | GLUCOSYL/GLUCURONOSYL TRANSFERASES | 557 | 990 | - | - | |
Lsi08g00877 | 1955 | PANTHER | GLYCOSYLTRANSFERASE | 1216 | 1435 | - | - | |
Lsi08g00877 | 1955 | Pfam | UDP-glucoronosyl and UDP-glucosyl transferase | 1247 | 1410 | IPR002213 | GO:0008194 | |
Lsi08g00877 | 1955 | Pfam | UDP-glucoronosyl and UDP-glucosyl transferase | 820 | 965 | IPR002213 | GO:0008194 | |
Lsi08g00877 | 1955 | Pfam | UDP-glucoronosyl and UDP-glucosyl transferase | 1716 | 1868 | IPR002213 | GO:0008194 | |
Lsi08g00877 | 1955 | CDD | STKc_TEY_MAPK | 59 | 444 | - | - | |
Lsi08g00877 | 1955 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 1473 | 1906 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01406 | Lsi-Chr2:19325394 | Lsi08g00877 | Lsi-Chr8:17123544 | 0 | dispersed | |
Lsi03g00165 | Lsi-Chr3:2232751 | Lsi08g00877 | Lsi-Chr8:17123544 | 1.45E-36 | dispersed | |
Lsi03g00538 | Lsi-Chr3:6465524 | Lsi08g00877 | Lsi-Chr8:17123544 | 1.15E-26 | dispersed | |
Lsi03g00843 | Lsi-Chr3:13311906 | Lsi08g00877 | Lsi-Chr8:17123544 | 1.87E-91 | dispersed | |
Lsi05g01146 | Lsi-Chr5:19264274 | Lsi08g00877 | Lsi-Chr8:17123544 | 9.99E-95 | dispersed | |
Lsi05g01147 | Lsi-Chr5:19285603 | Lsi08g00877 | Lsi-Chr8:17123544 | 6.76E-95 | dispersed | |
Lsi08g00877 | Lsi-Chr8:17123544 | Lsi09g01590 | Lsi-Chr9:24025453 | 1.97E-176 | dispersed | |
Lsi08g00877 | Lsi-Chr8:17123544 | Lsi09g00226 | Lsi-Chr9:2368024 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83846 | PF00069 | Pkinase | 1.50E-60 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00877 | K14512 | K22426 | csv:101202851 | 794.267 |