Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00877 ATGCAACCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTACCACCACCACAGCACGACCCGGCGGCACACCAGCAGCATCAGCATCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTATAACATATTTGGTAACATCTTCGAAGTTACGGCCAAGTACAAGCCTCCTATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGGTCTATCATCTATGCGATCCCTTTTTTTTTCTTTTCCCTGCGGTTTGATTGTTTCAGTTCTGCTCTCAACTCCGAGACGAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGATAACAAGATCGATGCTAAGAGAACTCTTCGCGAGATCAAGCTTCTTCGGCATATGGATCATGAAAACGGAAATTCTAGAGTCTGTAGTCTCCACAGTGAGTCAAAAACCAAGCCATTCCACATAGCTGGCCATGCTACTTCCCCTAATGAGATGAGGATTGTTGTTGCAATTAGGGATATCATACCTCCGCCTCTAAGGGAAACATTTAATGATGTTTATATAGCATATGAGCTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCATTGTCAGTATTTCCTATACCAGATTCTCCGTGGATTGAAGTACATACATTCAGCTAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATTTGTGATTTCGGACTTGCTCGTGTTACTTCTGAAACTGACTTTATGACAGAATATGTGGTTACAAGATGGTACCGTGCCCCAGAGCTCTTACTTAATTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGAGATCATGTGCATCAGTTGCGCTTGCTTTTGGAGCTGATTGGCACTCCATCAGAGGCTGATCTCGGTTTTTTGAACGAGAATGCTAAAAGATACATACGGCAACTACCTCATTACCATCGTCAGTCATTCACTGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGACGCTCTAGCTCATCCTTATTTGACTTCATTGCATGACATTAGTGATGAGCCTGTCTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCATGCACTTACCGAGGAACAGATGAAAGAGCTGATCCATCTAGAAGCGCTTGCATTTAACCCCGAACAGAGGCCTTCTGAAAACTCTTTGATCCTTGGGGGTGATGGCAGTGAAGCCAATGACACCAGGTTCACATCAATGATAACGCTCGAGTTACCTCGATCACCATCTAGGTTGTTTTCGGATTCGAACTCATGCTTGTATCATCGTTGCTACTGCCACTGTTGCAACTGTAACCGTCGAGATTTGATTGATCTTATAACAAGATCGCTAATTTGTGTGACGTGGAGAAATATTTATAAAAGGAGAGCCTGCATTGCTAGCGTGACCAAGAAGAAGAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAATAATAATGGAGATAGGCGAAGATCCACATATCATAGTGTTTCCATTTCCATCACAAGGCCACATAAATCCTCAGCTTCAATTCGCAAAACGCCTAATCGCAAACGGAATCAAGGTAACATTACTCACAACTTTACATGTTAGCCAACACTTGAAATTGCAGGGCGATTATTCCAATTCAGTGAAGATCGAAATCATTTCCGATGGCTCTGAGAATCGTCAAGAAACCGATACCATGCGCCAAACTCTGGATCGATTTCGGGACAAAATGACCAAAAACTTGGAAAATTACTTGCAAAAAGCCATGAATGCTTCAAATCCACCTCGATTTATTCTGTACGATTCCACAATGCCTTGGGTTTTGGAAGTCGCGAAGGAGTTCGGACTCGCTAGGGCTCCGGTTTACACTCAATCTTGTGCCCTAAATAGTATAAATTATCATGTTCTTCATGGTCAATTGAAACTTCCTCCTGAATCCTCTACTATTTCGTTGCCTTCTATGCCTCTGCTTTCCCCTAATGATCTCCCTGCTTATGATTATGATCCTGCATCCGTTGATACCATCATCGATCTTCTTACTAGTCAATATTCTAATATTGAAGATGCGGATCTGCTTTTCTGCAACACTTTTGACAAATTGGAAGGGGAGATTATCAAATGGATGGAGAGCTGGGGGAGGCCAGTGAAAACCATAGGACCAACTATTCCATCAGCATACTTAGACAACAGAGTAGAGAATGACAAGTTCTATGGGTTAAGCCTGTTTGAGCCCAACCAAGATAACTGTCTAAAATGGCTACACACCAAGCCTCCTGCTTCTGTTCTCTATATCTCTTATGGAAGTTTAGTAGAAATGGGAGAAGAACAGCTCAAAAACTTAGCTCTTGGAATCAAAGAAACTGGCAAATTCTTCTTGTGGGTTGTTAGAGACACAGAAGCTCAGAAGCTTCCCCCAAACTTTATAGAAAGTGTTGGGGATAAAGGTCTTGTAGTCAGCTGGTGCTCGCAGCTCGAGGTTTTAGCTCACCCGGCGATCGGTTGCTTCTTTACACATTGCGGTTGGAACTCGACGCTCGAGGCGCTGTGCTTGGGCGTCCCGGTTGTGGCTTTCCCACAGTGGGCTGATCAGGTGACTAATGCTAAGTTTTTGGAAGATGTTTGGAAAATTGGGAAGAGAGTGAAGGTGAATGAGAAGAGGTTGGCAAGTCAAGAAGAGATAAGGAGTTGCATTTGTGAAGTGATGGAAGGAGAGAGAGCTAATGAGTTTAAGAACAATTCATTAGAATGGAAGAAATGGGCAAAAGAAGCCATGGAGGAAGAATATTCTCTAAATCGAATCAATTATTCGACGCCGGCGAGAATGGAAAAGACAACGGCAAACGGCGGAAGGAGATCAAGCCATGTGGTGGTGTTTGCTTATCCAAAGCACGGCCATATGAGTCCAATGCTTCAATTTGCTAAGCGATTGGCTTCTAAAGGCCTTCGAGTAACATTTCTCACCACTTCCTCTGCAACTCAATCTCTCCAAATCAATCTTCCTCACTCCTATCAAATCGATCTTCAATTCATCTCCGACGTCCGTACCGAAGCCATTCTGTCTCTGAAGGACGAGCATGATAGCTTCGAGGCCGTCGTTTCGAGGTCGTTTGGGGATTTCATTGACGGAGCCCTAATCGATCCTCTTCCTCTGAGATTCTTCGTGGTTTTCGATTCTGTTATGCCTTGGGCAATGGATGTGGCTACAGAGCGAGGGCTGGATTCGGCGCCGTTTTTCACTGAATCTTGTGCCGTTAATCACATTCTGAATCAGGTCTATGAAGGTTCGTTGAATTTGAGCAATGTTCCTCCGGCGGCGGCGGTTTCGATTCCGTCACTTCCGGTTCTTCAAGCCGAGGATCTGCCGTTTTTCCCTTACGAGCCAGAAGTGGTAATGAAATTCATGATTAGGCAATTTTCGAGTTTCAAGAACGCGAAATGGATTTTCGTCAACACTTTTGATCAGCTTGAGATGAAGTTGGAGGATGACAAAAGCTATGGCCTAAAGCACTTAAAAATGGAAAATGGCAAAATTTTGGAATGGTTAGACACAAAAGAAAGTGGTTCAGTCATTTACATTTCATTTGGAAGTTTGGTTATTTTACCACAACAACAAGTGGATGAACTAAGCAATTTCCTCAAACACATTACTACAAATCTTTCTTTCTTATGGGTCTTAAGAGAATCAGAAATGGCAAAACTTCCCAACAACTTTGTTCAACAAACATCACATAGAGGCTTAGTTGTCAATTGGTGTTGTCAACTTCAAGTTCTCTCCCACAATGCTATAGGTTGTTTCGTCACGCACTGCGGTTGGAATTCGACGATCGAAGCCTTGAGCCTGGGAGTACCGATGGTCGCTGTTCCGCAGTGGATCGATCAAACGACGAACGCTAAGTTCGTTGCGGATGTTTGGGAAGTTGGAGTTAGGGTGAAGATTAGTAATGAGAAAGGGATTGCAACAAAGGAAGAATTAGAAGGCTCTATTCAAAAGGTTTTTGGAGGAGATGGGAAGAATAAGATTAAAAGTAATTCAATCAAATTGAGGAAACTTGCTAAAGAAGCTATGGATGAAGGTGGTAGCTCTGATAAAAACATTCAAGAATTTGTTGACTCAATTATTTCATCCATCAGCAGCACCACCACCACCACCGCCATTCTCATCTCCGACAAAAAGCCGTCGGAAATGGAGAAGACGACGGAGAAGGGAGGAGGAAGAAGAAAAAGAAGAATGGAACAGAATCATGTAATCGTTTTCGCTTTCCCAAGGCACGGCCACATGAGCCCAATGCTCCAATTCTCGAAGCGATTAATCTCCAAAGGCCTTCTCCTCACATTCCTCACCACTTCCTCTGCATCTCAATCCCTAGTTCTCAATCTCCCATCCTCTCCCTCTTTCCACCTCAAAATCATCTCCGATGTCCCTGAATCCAACGATCTCGCCACTCTCCACGCCTATCTCCGGAGCTTCAGAGCCGCCGTCACCAAATCCTTGACCAATTTCATCGACCAAGCCTTAATTTCAAGTTCCGATGAAGAAGTTCCTCCTACTTTGATTGTTTACGATTCTGTTATGCCCTGGGTACAGAGTATCGCTGCAGAGCGAGGTCTTGATGCAGCTCCGTTTTTCACTCAATCCGCCGCCGTTAATCATATCCTCCATCTCGTCTATGGAGGATCTCTGAGTATTCCGCCGCCGCAGAATGTGACGGTTTCGCTTCCGACGGAGATTGTTCTTCAGCCAGGAGATCTGCCAGCGTTTCCTGATGATCCTGAAGTGGTTTTGGAGTTCATGACGAGTCAGTTCTCCAATTTGGAGAATGTTGTTAATTGGATGGCCAAAACATTGCCTATCAAGACAGTGGGACCAACCATTCCATCGGCATATCTAGACGGTCGGTTAGAGAATGACAAAGCCTACGGTTTGAATATCTCAAAATCCAACGGTGGGAAGAACCCCATCCAGTGGTTAGACTCAAAAGAAACTGCCTCAGTTGTTTATATTTCATTTGGAAGTTTGGTTATCTTACTTGAAGAACAAGTAAATGAACTGACAAATTTGCTTAGAGACACTGATTTTTCCTTCTTATGGGTCCTAAGAGAATCAGAATTTGAAAAGCTTCCTAACAACTTTATACAAGACACATCAGAACGTGGCCTAATTGTGAACTGGTGCAGTCAACTACAAGTTCTGTCTCATAAGGCTGTAAGTTGTTTTGTGACTCATTGTGGTTGGAACTCGACGCTTGAAGCGTTGAGCTTGGGGGTGCCAATGGTTGCAATCCCGCAGTGGGTCGATCAAACGACAAATGCAAAGTTTGTTGCAGATGTTTGGGAAGCCGGAGTTCGTGTGAAGAAGAATGAGAAAGGGGTTGCTACAAAGGAAGAACTAGAAGCCTCCATCAGGAAGGTTGTTGTTCAAGGAGAAAAGCCAAATGAATTTAAACAAAACTCAATCAAGTGGAAGGAATTGGCTAAAGAAGCTGTGGATGAAGGAGGCAGTTCTGATAAACACATTGAAGAATTTGTCCAAGCAATTGTTGCATCAAATAAGTCATTCCAAACAAGCTTAAAATCATTAGCTAAATCTAAACATTCATTCCTTTGCAACAACAACGACTTGTTTGCCTATGTTGCGACCCGACAAGATGCCGATGAGAGCGGATGGACCATTCTCAAGGCCATAAGCTAA 5868 43.78 MQPDDTVMSEAASVPPPQHDPAAHQQHQHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVWSIIYAIPFFFFSLRFDCFSSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENGNSRVCSLHSESKTKPFHIAGHATSPNEMRIVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIHLEALAFNPEQRPSENSLILGGDGSEANDTRFTSMITLELPRSPSRLFSDSNSCLYHRCYCHCCNCNRRDLIDLITRSLICVTWRNIYKRRACIASVTKKKKKEEEEEEEEEIIMEIGEDPHIIVFPFPSQGHINPQLQFAKRLIANGIKVTLLTTLHVSQHLKLQGDYSNSVKIEIISDGSENRQETDTMRQTLDRFRDKMTKNLENYLQKAMNASNPPRFILYDSTMPWVLEVAKEFGLARAPVYTQSCALNSINYHVLHGQLKLPPESSTISLPSMPLLSPNDLPAYDYDPASVDTIIDLLTSQYSNIEDADLLFCNTFDKLEGEIIKWMESWGRPVKTIGPTIPSAYLDNRVENDKFYGLSLFEPNQDNCLKWLHTKPPASVLYISYGSLVEMGEEQLKNLALGIKETGKFFLWVVRDTEAQKLPPNFIESVGDKGLVVSWCSQLEVLAHPAIGCFFTHCGWNSTLEALCLGVPVVAFPQWADQVTNAKFLEDVWKIGKRVKVNEKRLASQEEIRSCICEVMEGERANEFKNNSLEWKKWAKEAMEEEYSLNRINYSTPARMEKTTANGGRRSSHVVVFAYPKHGHMSPMLQFAKRLASKGLRVTFLTTSSATQSLQINLPHSYQIDLQFISDVRTEAILSLKDEHDSFEAVVSRSFGDFIDGALIDPLPLRFFVVFDSVMPWAMDVATERGLDSAPFFTESCAVNHILNQVYEGSLNLSNVPPAAAVSIPSLPVLQAEDLPFFPYEPEVVMKFMIRQFSSFKNAKWIFVNTFDQLEMKLEDDKSYGLKHLKMENGKILEWLDTKESGSVIYISFGSLVILPQQQVDELSNFLKHITTNLSFLWVLRESEMAKLPNNFVQQTSHRGLVVNWCCQLQVLSHNAIGCFVTHCGWNSTIEALSLGVPMVAVPQWIDQTTNAKFVADVWEVGVRVKISNEKGIATKEELEGSIQKVFGGDGKNKIKSNSIKLRKLAKEAMDEGGSSDKNIQEFVDSIISSISSTTTTTAILISDKKPSEMEKTTEKGGGRRKRRMEQNHVIVFAFPRHGHMSPMLQFSKRLISKGLLLTFLTTSSASQSLVLNLPSSPSFHLKIISDVPESNDLATLHAYLRSFRAAVTKSLTNFIDQALISSSDEEVPPTLIVYDSVMPWVQSIAAERGLDAAPFFTQSAAVNHILHLVYGGSLSIPPPQNVTVSLPTEIVLQPGDLPAFPDDPEVVLEFMTSQFSNLENVVNWMAKTLPIKTVGPTIPSAYLDGRLENDKAYGLNISKSNGGKNPIQWLDSKETASVVYISFGSLVILLEEQVNELTNLLRDTDFSFLWVLRESEFEKLPNNFIQDTSERGLIVNWCSQLQVLSHKAVSCFVTHCGWNSTLEALSLGVPMVAIPQWVDQTTNAKFVADVWEAGVRVKKNEKGVATKEELEASIRKVVVQGEKPNEFKQNSIKWKELAKEAVDEGGSSDKHIEEFVQAIVASNKSFQTSLKSLAKSKHSFLCNNNDLFAYVATRQDADESGWTILKAIS 1955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17123544 17158440 + Lsi08G008770.1 Lsi08g00877 668803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00877 1955 CDD GT1_Gtf-like 1014 1421 IPR002213 GO:0008194
Lsi08g00877 1955 MobiDBLite consensus disorder prediction 1 37 - -
Lsi08g00877 1955 Gene3D Glycogen Phosphorylase B; 1222 1413 - -
Lsi08g00877 1955 Gene3D Glycogen Phosphorylase B; 796 982 - -
Lsi08g00877 1955 Gene3D Glycogen Phosphorylase B; 1698 1886 - -
Lsi08g00877 1955 MobiDBLite consensus disorder prediction 23 37 - -
Lsi08g00877 1955 PANTHER GLYCOSYLTRANSFERASE 557 990 - -
Lsi08g00877 1955 Gene3D Glycogen Phosphorylase B; 560 988 - -
Lsi08g00877 1955 CDD GT1_Gtf-like 556 986 IPR002213 GO:0008194
Lsi08g00877 1955 SUPERFAMILY Protein kinase-like (PK-like) 71 409 IPR011009 -
Lsi08g00877 1955 Pfam Protein kinase domain 101 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00877 1955 PANTHER GLYCOSYLTRANSFERASE 1472 1909 - -
Lsi08g00877 1955 ProSitePatterns UDP-glycosyltransferases signature. 1783 1826 IPR035595 -
Lsi08g00877 1955 Gene3D Transferase(Phosphotransferase) domain 1 200 426 - -
Lsi08g00877 1955 PANTHER GLYCOSYLTRANSFERASE 1013 1218 - -
Lsi08g00877 1955 Gene3D Glycogen Phosphorylase B; 1002 1221 - -
Lsi08g00877 1955 ProSiteProfiles Protein kinase domain profile. 66 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00877 1955 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 556 989 - -
Lsi08g00877 1955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lsi08g00877 1955 SMART serkin_6 66 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00877 1955 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1013 1433 - -
Lsi08g00877 1955 CDD GT1_Gtf-like 1474 1901 IPR002213 GO:0008194
Lsi08g00877 1955 ProSitePatterns UDP-glycosyltransferases signature. 1310 1353 IPR035595 -
Lsi08g00877 1955 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 1216 1435 - -
Lsi08g00877 1955 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 1013 1218 - -
Lsi08g00877 1955 Coils Coil 535 555 - -
Lsi08g00877 1955 ProSitePatterns UDP-glycosyltransferases signature. 880 923 IPR035595 -
Lsi08g00877 1955 Gene3D Glycogen Phosphorylase B; 1477 1898 - -
Lsi08g00877 1955 Gene3D Phosphorylase Kinase; domain 1 69 433 - -
Lsi08g00877 1955 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 1472 1909 - -
Lsi08g00877 1955 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 557 990 - -
Lsi08g00877 1955 PANTHER GLYCOSYLTRANSFERASE 1216 1435 - -
Lsi08g00877 1955 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 1247 1410 IPR002213 GO:0008194
Lsi08g00877 1955 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 820 965 IPR002213 GO:0008194
Lsi08g00877 1955 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 1716 1868 IPR002213 GO:0008194
Lsi08g00877 1955 CDD STKc_TEY_MAPK 59 444 - -
Lsi08g00877 1955 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1473 1906 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01406 Lsi-Chr2:19325394 Lsi08g00877 Lsi-Chr8:17123544 0 dispersed
Lsi03g00165 Lsi-Chr3:2232751 Lsi08g00877 Lsi-Chr8:17123544 1.45E-36 dispersed
Lsi03g00538 Lsi-Chr3:6465524 Lsi08g00877 Lsi-Chr8:17123544 1.15E-26 dispersed
Lsi03g00843 Lsi-Chr3:13311906 Lsi08g00877 Lsi-Chr8:17123544 1.87E-91 dispersed
Lsi05g01146 Lsi-Chr5:19264274 Lsi08g00877 Lsi-Chr8:17123544 9.99E-95 dispersed
Lsi05g01147 Lsi-Chr5:19285603 Lsi08g00877 Lsi-Chr8:17123544 6.76E-95 dispersed
Lsi08g00877 Lsi-Chr8:17123544 Lsi09g01590 Lsi-Chr9:24025453 1.97E-176 dispersed
Lsi08g00877 Lsi-Chr8:17123544 Lsi09g00226 Lsi-Chr9:2368024 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83846 PF00069 Pkinase 1.50E-60 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00877 K14512 K22426 csv:101202851 794.267