Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00889 ATGTTGTTCATTTACATAGGAAAACAAAGCAGAGTGTGCATTGATGAAATGCTTGCTGAGCAGCCAGTATTTTACGTCGAATGGGAGTGGGAGTGTCAAAATCCAATTAAAGGCTGTTTCAAAGTGAACCCAAATCTTTACCCCTTTTCGAATCAGCTTGTATACTCGTCTGGTGGATCGCCCTCTGACATAGTTGATAGGCCAATGATTTGTTTCCCAATTCCCAGCGGACGTACTTACAAGAAGCTCAATTTTCTACGTAAAATGGCATTGGTTGTGATCTGTGGTCAGCCATGCAGTGGGAAGTCCACTGCGGCTCTCTGCTTAGCTGAAGCTCTCAAGGAATCAAATGTAAAACAAGCCGTTAGGATAATTGATGAAACTTCCCTTCATTTGGATCGGAATCAGAGCTATGCCAATATGCCTGCTGAAAAGAATCTAAGAGGAGTTCTCAGATCTGAAGTTGACAGATCTGTATCTAGAGATAGCATTGTCATTGTAGACTCCTTGAACAGTATAAAGGGTTACCGATACGAACTGTGGTGTTTGGCTCGTGGAACAGGAATCAGGTACTGTGTGCTGTACTGCGATGTGGAAGAAACCAATTGCAGGAAGTGGAACGAAGAGCGACGAGAGAAAGGAGAAGCGAACTATGATGATAAGATATTTGAAGATCTGATCAGAAGGTTTGAGAGACCAGATGGTAGAAATAGATGGGACTCGCCATTGTTTGAACTATTCCCACATAAAGATGGAATAGAGAAATCCGCTCAGGTCATTCTAGATGCTGTATCATACTTGACTAAAACAGTGGACTCAAAGTCGCGGGATGTAAAAATTTTACAGCCAACGATTGCTACTCAGAACTCTCGATTTTCGGAGGCGAATTCTCTCTATGAGTTGGACAAAGCTACACAAGAGGTGGTTAATGCTATTGTAGAAGCTCAAGCTCTGGGAGGGCCTCTGAATAGTATCCCTCTGGGTCAGGAATTACCAACCATCAACATTTCAAGGTCGGTCGGACTACCGGAGCTTCGGAGGCTACGGAGAACTTTCATTAAACTAACAGGGCAAACTAGCTTAAGCGGACCACCACCACCTTCTGATGCCGAGAGCGCCAAGAGGATTTATAACATCACCATAGTCGTATTCGGACATGAGATTTTCACCTCATACAACTCCTCGAGGGTCATACATACCACTTCAAGATCATCGAGGAATTTCAAGCCCATATATAACCGAGTTTCACAATTGAATATGGAAAGCTCCCGGTTCGTTGTGTATTTTGGTCGTAGATCGATTCTGAACTGGTTTCTCTTGTGCATCGTTACTTTAGTTTCAATAACAACAGTCTTTGGAGGATCTTCTTCGAATAACTTCGACTATGTTGCTTCTGAGCCTGAATCTAATGATTATGGTAACTGCATAACTGAATCTAGCGATTATAGCAACTGTACAAGGCTAAAGAGTCAAGATTCAGTTGAATACTTGGAGCTAAATTCTTTTACTGGGCAAGGAGAATTTGGCTTGTGTAGGAGTAAAAAAGAGAACTATGTCCCCTGTTATGGTGGTGTTCCTTCAGGATATTTGTTGAATGAATTTGACAATGATGACGACTTTGATAGACATTGTGAAATATCTAGAAGTGAAAACCGCTGTCTGGTTCCTCCTCCTAAAGCTTATAAAATCCCAGTGAGATGGCCTGCAGGTAGGGATCTAATATGGTCTAAAAATGTGAAGATGGTGGAAAACAAATTTATTTCACCCAGAAGCTTGAACAGAAGGTCGGTACCTGATTTGAGTAAAATTTTACTTCCTTTAATGTCAAGATTCACGCCAGAAAAAAATCAGTTTGCCTTTGAGTTGGATGATATCAGAGATTATTCTCATCAAATTGCAGAGAAGATGGGATTAAGGAATGACTCGGAATTTCTTCAATCTGGTGTCCACAGTGTGCTAGATATTGGTTGTGAATATACTAGTTATGGAGCTCATTTGACATCTTTGAAAGTAATGTCTATTTGCATTGGGGAATATGAAGAATCAAGTAGTCAAGTTCAGCTGGCCCTTGAGAGAGGTCTTCCAGCAATGATTGGCAACTTCAGTACAAGACAGCTTCCATATCCATCACTGTCATTTGACATGATTCACTGCAGTCAGTGTGCTTCCAGTAGGAACATGATAGGAAAGAAGTTCCTGATTGAAGTAAACCGTCTACTCAAGCCTGGCGGATATTTTGTTATGCCTTCAAATAGCAGCCGAGTATTAACTAGGTGGAAAGGAAGATACATCTCAAAAATGATTGAAGAGCTAGAATACTGTTGGAAACTTCAAGGTTTGCTAAGAGAACCTTTTGTGTGGCAGAAATCAGAGAATACTAACTGCTATCTGTCACGAAAGACAGAGTCCATACCTCTGTGTGGAATGGAGGATGACATTCCAACGTATTATAATCCCCTCAGATCATGTTTGATTGGACCATCCAACAAAAGGTGGATTGCAGTCCAGAACATATCCTCTAAGTTGGATTCAACTTATCTTGAAGTTCATGGGGTGAGGCCTGAAGACTTCCAAGATGAAAGGACTGAATGGAGTTCAGTTTTGAAAAATTATTGGTCTTTGCTTACGCCCTTAATTTTCTCTGATCATCCAAAGAGGCTGACTGAAGAAGATCCATTGCCTCCTTTTAATATGTTCCGCAATGTGATGGATATGAATGCTCATTATGGGGGCTTTAATGCAGCATTATTGGAAGAGAAGAAACTAGTGTGGGTGATGAACGTTGTCCCTGTTGGGTCTTCTAACACCCTTCCTCTCATTTTTTATCAAGGATTTGCTGGCGTTCTCCATGACTGGTGTGAGCCTTTTCCCACTTACCCAAGAACATACGATATGCTGCACGCGAAAGGGCTCATTTCACTAATCAGATCAAAGGGGTGCAGTTTGACAGACTTATTATTGGAGATGGATAGAATACTACGTCCTGAGGGTTGGGTAATTCTCTATGATACGGTAGAAGCTATCGAGATGGCCCGCATGATAGCAACTCAAATGCGTTGGGAAGCAAGGGCAATCGACCTTCAAAATGGCATCGAGCAGCAGCTACTCGGCAGGAATCAGTTTGACTTCGGGTTCAAGGTGATATGGATTCTGAAGAATAGAATAGGGGCAAATTTGATGGGCAGACATTTACTGTGCAAATATAGAATAGGAAAAACAGGCACCAAAGCCACAGTTGATCCTCTTTTTTCTTCTTTGTGGGAGTGTTGTTATACAGATATAATGTCAAACTCAAACTCACATCATCCAAAGACCCTTTTGGGCATTGGCACTGCCTCTACTTCTATTTGA 3351 41.63 MLFIYIGKQSRVCIDEMLAEQPVFYVEWEWECQNPIKGCFKVNPNLYPFSNQLVYSSGGSPSDIVDRPMICFPIPSGRTYKKLNFLRKMALVVICGQPCSGKSTAALCLAEALKESNVKQAVRIIDETSLHLDRNQSYANMPAEKNLRGVLRSEVDRSVSRDSIVIVDSLNSIKGYRYELWCLARGTGIRYCVLYCDVEETNCRKWNEERREKGEANYDDKIFEDLIRRFERPDGRNRWDSPLFELFPHKDGIEKSAQVILDAVSYLTKTVDSKSRDVKILQPTIATQNSRFSEANSLYELDKATQEVVNAIVEAQALGGPLNSIPLGQELPTINISRSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDAESAKRIYNITIVVFGHEIFTSYNSSRVIHTTSRSSRNFKPIYNRVSQLNMESSRFVVYFGRRSILNWFLLCIVTLVSITTVFGGSSSNNFDYVASEPESNDYGNCITESSDYSNCTRLKSQDSVEYLELNSFTGQGEFGLCRSKKENYVPCYGGVPSGYLLNEFDNDDDFDRHCEISRSENRCLVPPPKAYKIPVRWPAGRDLIWSKNVKMVENKFISPRSLNRRSVPDLSKILLPLMSRFTPEKNQFAFELDDIRDYSHQIAEKMGLRNDSEFLQSGVHSVLDIGCEYTSYGAHLTSLKVMSICIGEYEESSSQVQLALERGLPAMIGNFSTRQLPYPSLSFDMIHCSQCASSRNMIGKKFLIEVNRLLKPGGYFVMPSNSSRVLTRWKGRYISKMIEELEYCWKLQGLLREPFVWQKSENTNCYLSRKTESIPLCGMEDDIPTYYNPLRSCLIGPSNKRWIAVQNISSKLDSTYLEVHGVRPEDFQDERTEWSSVLKNYWSLLTPLIFSDHPKRLTEEDPLPPFNMFRNVMDMNAHYGGFNAALLEEKKLVWVMNVVPVGSSNTLPLIFYQGFAGVLHDWCEPFPTYPRTYDMLHAKGLISLIRSKGCSLTDLLLEMDRILRPEGWVILYDTVEAIEMARMIATQMRWEARAIDLQNGIEQQLLGRNQFDFGFKVIWILKNRIGANLMGRHLLCKYRIGKTGTKATVDPLFSSLWECCYTDIMSNSNSHHPKTLLGIGTASTSI 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17277727 17288286 + Lsi08G008890.1 Lsi08g00889 668815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00889 1116 CDD AdoMet_MTases 652 748 - -
Lsi08g00889 1116 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 517 1032 IPR004159 GO:0008168
Lsi08g00889 1116 PANTHER METHYLTRANSFERASE PMT4-RELATED 424 1038 - -
Lsi08g00889 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 237 IPR027417 -
Lsi08g00889 1116 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 646 777 IPR029063 -
Lsi08g00889 1116 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 896 1020 IPR029063 -
Lsi08g00889 1116 Pfam Chromatin associated protein KTI12 89 357 IPR013641 -
Lsi08g00889 1116 Gene3D - 87 279 IPR027417 -
Lsi08g00889 1116 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 424 1038 IPR004159 GO:0008168
Lsi08g00889 1116 Gene3D Vaccinia Virus protein VP39 612 782 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00889 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - jre:109014361 689.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02238 Lsi08g00889 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02238 Lsi-Chr4:29413061 Lsi08g00889 Lsi-Chr8:17277727 3.08E-55 dispersed
Lsi08g00889 Lsi-Chr8:17277727 Lsi03g00357 Lsi-Chr3:4217809 7.17E-91 dispersed
Lsi04g00369 Lsi-Chr4:3679177 Lsi08g00889 Lsi-Chr8:17277727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g417 . Blo12g00708 Bda01g00888 Bda03g00489 Bpe02g00111 Bpe04g00443 . Bma01g02610 Cmo05g00528 . Cma01g01610 Cma09g00561 Car01g01228 . . Cpe06g00427 . . . . . . . . . . . . . . . Cone4ag1332 Cone7ag1597 Cone17ag1213 Cone20ag0512 Lsi04g02238 Csa03g04449 Chy04g00251 . Blo17g00117 Blo18g00131 Bda11g00768 Bda13g01399 Bpe02g01124 Bpe14g00456 Bma01g01401 Bma02g00139 Sed14g0863 Cmo01g01656 Cmo09g00551 . . Car05g00451 Car09g00492 Cpe11g00441 Cpe02g00370 Bhi09g02441 Tan01g3792 Cmetu02g0320 . Hepe01g2131 . . Cla11g01386 Cam11g1443 Cec11g1469 Cco11g1465 Clacu11g1600 Cmu11g1419 Cre11g1839 Lsi08g00889 . . Cme04g00281
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015778 0 0 0 0 0 1 0 1 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 10
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00889 Lsi_Chr08 FPKM 157.29541 164.618591 179.939346 167.89888 152.782074 136.599777 165.310043 257.612183 256.069275 290.528992