Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00896 ATGTCTTCCGCCGAGAAGGAGAGAGAGACCCAGGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAACGCTATGACGAAATGGTCGAGTGTATGAAGAATATTGCAAAGCTTGACCTCGAACTAACTGTAGAGGAGAGGAACCTTCTTTCTGTGGGATACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGTCTAAGGGGAATGAGAACATTGTAAAATTGATAAAGAGTTACCGTCAGAAAGTGGAGGAGGAGCTTTCAAAAATTTGTGGTGATATTCTCTCTATCATAGACAAGCATTTAATCCCTCATTCCTCCTCTGCAGAAGCCACTGTTTTCTACTACAAGATTACATCATGGGGAGACCTTGCGCGCCCCAATGCTGCCTCAGGCACTGCGAATACCGAACTCCCATCAACCCACCCAATCCGTCTTGGCCTTGCCCTCAATTTTTCTGTCTTCTACTATGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTGATCATGCAGCTGTTGAGAGACAACCTCACCCTCTGGACCTCGGACTTGCCTGAAGATGGTGGTGACGAAAACTTCAAAGCTGAGGAATCCAAACCTGCTGAACCTGAGGCTCAGCAAGCCAAATGA 738 46.88 MSSAEKERETQVYMAKLAEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENIVKLIKSYRQKVEEELSKICGDILSIIDKHLIPHSSSAEATVFYYKITSWGDLARPNAASGTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENFKAEESKPAEPEAQQAK 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17327349 17331270 - Lsi08G008960.1 Lsi08g00896 668822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00896 245 Pfam 14-3-3 protein 139 217 IPR023410 -
Lsi08g00896 245 Pfam 14-3-3 protein 14 136 IPR023410 -
Lsi08g00896 245 SUPERFAMILY 14-3-3 protein 7 219 IPR036815 -
Lsi08g00896 245 PRINTS 14-3-3 protein zeta signature 190 219 IPR000308 -
Lsi08g00896 245 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Lsi08g00896 245 PANTHER BNAC03G57490D PROTEIN 138 240 - -
Lsi08g00896 245 PANTHER BNAC03G57490D PROTEIN 4 129 - -
Lsi08g00896 245 PIRSF 14-3-3 137 229 IPR000308 -
Lsi08g00896 245 PIRSF 14-3-3 2 139 IPR000308 -
Lsi08g00896 245 MobiDBLite consensus disorder prediction 219 245 - -
Lsi08g00896 245 ProSitePatterns 14-3-3 proteins signature 2. 199 218 IPR023409 -
Lsi08g00896 245 MobiDBLite consensus disorder prediction 223 239 - -
Lsi08g00896 245 PANTHER 14-3-3 PROTEIN 138 240 IPR000308 -
Lsi08g00896 245 PANTHER 14-3-3 PROTEIN 4 129 IPR000308 -
Lsi08g00896 245 Gene3D - 1 135 IPR036815 -
Lsi08g00896 245 Gene3D - 136 230 IPR036815 -
Lsi08g00896 245 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Lsi08g00896 245 Coils Coil 14 34 - -
Lsi08g00896 245 SMART 1433_4 8 230 IPR023410 -
Lsi08g00896 245 Coils Coil 177 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02235 Lsi08g00896 CCT
Lsi04g02235 Lsi08g00896 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00368 Lsi-Chr4:3674392 Lsi08g00896 Lsi-Chr8:17327349 3.35E-148 dispersed
Lsi08g00896 Lsi-Chr8:17327349 Lsi11g01569 Lsi-Chr11:23995462 5.15E-125 dispersed
Lsi08g00896 Lsi-Chr8:17327349 Lsi08g00966 Lsi-Chr8:18146289 1.45E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00896 - K06630 csv:101221858 437.187