Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00896 ATGTCTTCCGCCGAGAAGGAGAGAGAGACCCAGGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAACGCTATGACGAAATGGTCGAGTGTATGAAGAATATTGCAAAGCTTGACCTCGAACTAACTGTAGAGGAGAGGAACCTTCTTTCTGTGGGATACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGTCTAAGGGGAATGAGAACATTGTAAAATTGATAAAGAGTTACCGTCAGAAAGTGGAGGAGGAGCTTTCAAAAATTTGTGGTGATATTCTCTCTATCATAGACAAGCATTTAATCCCTCATTCCTCCTCTGCAGAAGCCACTGTTTTCTACTACAAGATTACATCATGGGGAGACCTTGCGCGCCCCAATGCTGCCTCAGGCACTGCGAATACCGAACTCCCATCAACCCACCCAATCCGTCTTGGCCTTGCCCTCAATTTTTCTGTCTTCTACTATGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTGATCATGCAGCTGTTGAGAGACAACCTCACCCTCTGGACCTCGGACTTGCCTGAAGATGGTGGTGACGAAAACTTCAAAGCTGAGGAATCCAAACCTGCTGAACCTGAGGCTCAGCAAGCCAAATGA 738 46.88 MSSAEKERETQVYMAKLAEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENIVKLIKSYRQKVEEELSKICGDILSIIDKHLIPHSSSAEATVFYYKITSWGDLARPNAASGTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENFKAEESKPAEPEAQQAK 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17327349 17331270 - Lsi08G008960.1 Lsi08g00896 668822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00896 245 Pfam 14-3-3 protein 139 217 IPR023410 -
Lsi08g00896 245 Pfam 14-3-3 protein 14 136 IPR023410 -
Lsi08g00896 245 SUPERFAMILY 14-3-3 protein 7 219 IPR036815 -
Lsi08g00896 245 PRINTS 14-3-3 protein zeta signature 190 219 IPR000308 -
Lsi08g00896 245 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Lsi08g00896 245 PANTHER BNAC03G57490D PROTEIN 138 240 - -
Lsi08g00896 245 PANTHER BNAC03G57490D PROTEIN 4 129 - -
Lsi08g00896 245 PIRSF 14-3-3 137 229 IPR000308 -
Lsi08g00896 245 PIRSF 14-3-3 2 139 IPR000308 -
Lsi08g00896 245 MobiDBLite consensus disorder prediction 219 245 - -
Lsi08g00896 245 ProSitePatterns 14-3-3 proteins signature 2. 199 218 IPR023409 -
Lsi08g00896 245 MobiDBLite consensus disorder prediction 223 239 - -
Lsi08g00896 245 PANTHER 14-3-3 PROTEIN 138 240 IPR000308 -
Lsi08g00896 245 PANTHER 14-3-3 PROTEIN 4 129 IPR000308 -
Lsi08g00896 245 Gene3D - 1 135 IPR036815 -
Lsi08g00896 245 Gene3D - 136 230 IPR036815 -
Lsi08g00896 245 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Lsi08g00896 245 Coils Coil 14 34 - -
Lsi08g00896 245 SMART 1433_4 8 230 IPR023410 -
Lsi08g00896 245 Coils Coil 177 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00896 - - K06630 csv:101221858 437.187
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02235 Lsi08g00896 CCT
Lsi04g02235 Lsi08g00896 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00368 Lsi-Chr4:3674392 Lsi08g00896 Lsi-Chr8:17327349 3.35E-148 dispersed
Lsi08g00896 Lsi-Chr8:17327349 Lsi11g01569 Lsi-Chr11:23995462 5.15E-125 dispersed
Lsi08g00896 Lsi-Chr8:17327349 Lsi08g00966 Lsi-Chr8:18146289 1.45E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g412 . . . . . . . . Cmo05g00524 . Cma01g01607 . Car01g01226 . . . Cpe07g00087 Bhi04g00762 . . . Hepe10g0497 . Lcy13g1561 Cla08g01110 Cam08g1563 Cec08g1137 Cco08g1263 Clacu08g1267 . Cre08g1047 . . Cone8ag0206 Cone12ag0218 Lsi04g02235 Csa03g04446 Chy04g00255 Cme03g01863 . . . . . . . . . Cmo01g01654 . Cma12g00101 Cma05g00501 Car05g00448 . . Cpe02g00372 . . . . . . . Cla11g01382 Cam11g1440 Cec11g1466 Cco11g1462 Clacu11g1597 Cmu11g1416 Cre11g1836 Lsi08g00896 Csa02g02151 Chy03g01367 Cme04g00285
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00980 CCT 4 242 14-3-3 family AT4G09000 90.4 1.9e-118 422.5
Lsi04g02246 CCT 5 242 14-3-3 family AT4G09000 90.3 2.4e-118 422.2
Lsi07g00987 . 6 241 14-3-3 family AT4G09000 86.9 1.2e-112 403.3
Lsi04g02270 . 11 265 14-3-3 family AT4G09000 71.4 1.8e-97 352.8
Lsi11g01569 . 7 238 14-3-3 family AT4G09000 72.6 4.6e-93 338.2
Lsi08g00966 . 5 258 14-3-3 family AT4G09000 64.1 9.3e-86 313.9
Lsi04g02235 CCT,ECH 5 226 14-3-3 family AT4G09000 71.4 1.0e-84 310.5
Lsi08g01039 . 11 207 14-3-3 family AT4G09000 71.1 1.0e-76 283.9
Lsi08g00896 CCT,ECH 4 220 14-3-3 family AT4G09000 64.6 7.4e-75 277.7
Lsi04g00368 . 4 204 14-3-3 family AT4G09000 62.2 2.2e-71 266.2
Lsi04g02246 CCT 5 258 14-3-3 family AT1G78300 91.0 1.9e-124 442.2
Lsi08g00980 CCT 6 261 14-3-3 family AT1G78300 89.5 4.1e-124 441.0
Lsi07g00987 . 6 262 14-3-3 family AT1G78300 84.8 1.9e-116 415.6
Lsi04g02270 . 11 256 14-3-3 family AT1G78300 72.8 7.3e-97 350.5
Lsi11g01569 . 7 247 14-3-3 family AT1G78300 71.6 2.0e-94 342.4
Lsi08g00966 . 1 272 14-3-3 family AT1G78300 62.4 3.7e-88 321.6
Lsi04g02235 CCT,ECH 1 233 14-3-3 family AT1G78300 68.2 2.2e-85 312.4
Lsi08g01039 . 11 207 14-3-3 family AT1G78300 71.6 1.3e-77 286.6
Lsi08g00896 CCT,ECH 8 238 14-3-3 family AT1G78300 63.8 6.5e-77 284.3
Lsi04g00368 . 8 220 14-3-3 family AT1G78300 60.8 4.8e-72 268.1
Lsi07g00987 . 6 255 14-3-3 family AT5G38480 90.8 2.9e-122 434.9
Lsi04g02246 CCT 6 252 14-3-3 family AT5G38480 85.8 1.7e-114 409.1
Lsi08g00980 CCT 6 252 14-3-3 family AT5G38480 85.4 2.9e-114 408.3
Lsi04g02270 . 10 262 14-3-3 family AT5G38480 70.0 1.0e-95 346.7
Lsi11g01569 . 7 247 14-3-3 family AT5G38480 72.4 2.2e-93 339.0
Lsi08g00966 . 5 269 14-3-3 family AT5G38480 66.3 4.2e-89 324.7
Lsi04g02235 CCT,ECH 5 238 14-3-3 family AT5G38480 69.9 4.8e-85 311.2
Lsi08g00896 CCT,ECH 8 236 14-3-3 family AT5G38480 65.1 2.2e-77 285.8
Lsi08g01039 . 10 207 14-3-3 family AT5G38480 72.7 3.7e-77 285.0
Lsi04g00368 . 8 220 14-3-3 family AT5G38480 64.0 1.3e-74 276.6
Lsi08g00980 CCT 3 242 14-3-3 family AT1G35160 89.6 3.9e-118 421.4
Lsi04g02246 CCT 4 242 14-3-3 family AT1G35160 89.5 8.6e-118 420.2
Lsi07g00987 . 6 240 14-3-3 family AT1G35160 86.8 5.4e-112 401.0
Lsi04g02270 . 11 256 14-3-3 family AT1G35160 73.6 9.9e-98 353.6
Lsi11g01569 . 2 237 14-3-3 family AT1G35160 71.4 1.2e-92 336.7
Lsi08g00966 . 5 258 14-3-3 family AT1G35160 63.7 8.7e-86 313.9
Lsi04g02235 CCT,ECH 5 226 14-3-3 family AT1G35160 71.4 1.3e-84 310.1
Lsi08g01039 . 1 207 14-3-3 family AT1G35160 69.6 5.6e-77 284.6
Lsi08g00896 CCT,ECH 8 220 14-3-3 family AT1G35160 64.8 4.5e-74 275.0
Lsi04g00368 . 8 204 14-3-3 family AT1G35160 62.4 1.3e-70 263.5
Lsi07g00987 . 5 254 14-3-3 family AT5G16050 86.4 3.3e-116 414.8
Lsi08g00980 CCT 3 253 14-3-3 family AT5G16050 79.7 5.1e-109 391.0
Lsi04g02246 CCT 4 251 14-3-3 family AT5G16050 79.9 4.0e-106 381.3
Lsi04g02270 . 10 254 14-3-3 family AT5G16050 68.2 5.8e-89 324.3
Lsi11g01569 . 1 246 14-3-3 family AT5G16050 65.5 5.1e-85 311.2
Lsi08g00966 . 2 269 14-3-3 family AT5G16050 59.6 1.3e-80 296.6
Lsi04g02235 CCT,ECH 5 232 14-3-3 family AT5G16050 65.0 1.8e-77 286.2
Lsi08g01039 . 10 207 14-3-3 family AT5G16050 67.2 5.5e-71 264.6
Lsi08g00896 CCT,ECH 3 227 14-3-3 family AT5G16050 59.7 1.8e-69 259.6
Lsi04g00368 . 3 211 14-3-3 family AT5G16050 54.9 1.7e-64 243.0
Lsi04g02270 . 9 256 14-3-3 family AT5G10450 80.6 1.3e-107 386.3
Lsi04g02246 CCT 1 242 14-3-3 family AT5G10450 79.4 1.0e-104 376.7
Lsi08g00980 CCT 3 251 14-3-3 family AT5G10450 76.8 1.7e-104 375.9
Lsi07g00987 . 7 244 14-3-3 family AT5G10450 78.2 1.1e-103 373.2
Lsi08g01039 . 9 207 14-3-3 family AT5G10450 85.4 7.5e-92 334.0
Lsi11g01569 . 1 238 14-3-3 family AT5G10450 67.6 5.0e-88 321.2
Lsi08g00966 . 5 258 14-3-3 family AT5G10450 61.5 1.6e-81 299.7
Lsi04g02235 CCT,ECH 5 226 14-3-3 family AT5G10450 66.4 8.6e-80 293.9
Lsi08g00896 CCT,ECH 3 220 14-3-3 family AT5G10450 59.5 1.2e-68 256.9
Lsi04g00368 . 3 204 14-3-3 family AT5G10450 57.5 3.2e-66 248.8
Lsi07g00987 . 4 263 14-3-3 family AT3G02520 91.2 3.5e-126 448.0
Lsi08g00980 CCT 6 252 14-3-3 family AT3G02520 86.7 2.2e-117 418.7
Lsi04g02246 CCT 5 258 14-3-3 family AT3G02520 85.2 3.8e-117 417.9
Lsi04g02270 . 10 254 14-3-3 family AT3G02520 72.7 1.7e-96 349.4
Lsi11g01569 . 4 238 14-3-3 family AT3G02520 71.7 1.6e-91 332.8
Lsi08g00966 . 1 271 14-3-3 family AT3G02520 63.9 9.8e-89 323.6
Lsi04g02235 CCT,ECH 1 231 14-3-3 family AT3G02520 70.4 1.2e-86 316.6
Lsi08g01039 . 10 207 14-3-3 family AT3G02520 73.2 7.1e-79 290.8
Lsi08g00896 CCT,ECH 8 238 14-3-3 family AT3G02520 63.1 2.3e-77 285.8
Lsi04g00368 . 8 221 14-3-3 family AT3G02520 59.1 7.6e-73 270.8
Lsi04g02270 . 9 257 14-3-3 family AT5G65430 81.1 2.2e-109 392.1
Lsi04g02246 CCT 1 242 14-3-3 family AT5G65430 80.2 3.3e-105 378.3
Lsi08g00980 CCT 8 242 14-3-3 family AT5G65430 80.5 8.1e-104 373.6
Lsi07g00987 . 7 241 14-3-3 family AT5G65430 79.2 1.1e-103 373.2
Lsi08g01039 . 9 207 14-3-3 family AT5G65430 86.4 1.7e-93 339.3
Lsi11g01569 . 1 238 14-3-3 family AT5G65430 69.3 1.9e-89 325.9
Lsi08g00966 . 5 258 14-3-3 family AT5G65430 63.4 1.0e-82 303.5
Lsi04g02235 CCT,ECH 5 226 14-3-3 family AT5G65430 68.1 4.3e-81 298.1
Lsi08g00896 CCT,ECH 8 220 14-3-3 family AT5G65430 62.0 7.7e-70 260.8
Lsi04g00368 . 8 204 14-3-3 family AT5G65430 60.4 4.2e-68 255.0
Lsi11g01569 . 1 263 14-3-3 family AT2G42590 81.1 1.6e-118 422.5
Lsi08g00966 . 3 264 14-3-3 family AT2G42590 71.4 8.9e-101 363.6
Lsi04g02235 CCT,ECH 3 235 14-3-3 family AT2G42590 72.0 9.6e-95 343.6
Lsi08g00980 CCT 8 248 14-3-3 family AT2G42590 70.5 3.8e-91 331.6
Lsi07g00987 . 8 263 14-3-3 family AT2G42590 69.5 1.1e-90 330.1
Lsi04g02246 CCT 8 245 14-3-3 family AT2G42590 71.4 1.9e-90 329.3
Lsi08g00896 CCT,ECH 6 234 14-3-3 family AT2G42590 66.4 7.6e-84 307.4
Lsi04g00368 . 6 222 14-3-3 family AT2G42590 63.6 1.0e-80 297.0
Lsi04g02270 . 11 254 14-3-3 family AT2G42590 63.5 3.3e-79 292.0
Lsi08g01039 . 11 207 14-3-3 family AT2G42590 60.9 4.1e-61 231.9
Lsi11g01569 . 6 242 14-3-3 family AT1G22300 78.5 1.7e-103 372.5
Lsi08g00966 . 1 263 14-3-3 family AT1G22300 73.8 6.2e-101 364.0
Lsi04g02235 CCT,ECH 1 231 14-3-3 family AT1G22300 74.3 5.6e-94 340.9
Lsi07g00987 . 4 248 14-3-3 family AT1G22300 70.2 2.2e-90 328.9
Lsi08g00980 CCT 8 246 14-3-3 family AT1G22300 69.9 2.7e-88 322.0
Lsi04g02246 CCT 8 245 14-3-3 family AT1G22300 69.3 2.3e-87 318.9
Lsi08g00896 CCT,ECH 5 225 14-3-3 family AT1G22300 68.2 3.1e-84 308.5
Lsi04g00368 . 5 209 14-3-3 family AT1G22300 66.3 9.3e-81 297.0
Lsi04g02270 . 11 263 14-3-3 family AT1G22300 62.0 2.5e-78 288.9
Lsi08g01039 . 11 207 14-3-3 family AT1G22300 61.4 1.5e-59 226.5
Lsi11g01569 . 6 246 14-3-3 family AT1G34760 80.5 2.4e-105 378.6
Lsi08g00966 . 1 267 14-3-3 family AT1G34760 73.8 3.7e-101 364.8
Lsi04g02235 CCT,ECH 1 234 14-3-3 family AT1G34760 74.6 2.8e-93 338.6
Lsi07g00987 . 4 252 14-3-3 family AT1G34760 70.3 1.9e-89 325.9
Lsi08g00980 CCT 8 245 14-3-3 family AT1G34760 71.4 9.3e-89 323.6
Lsi04g02246 CCT 8 249 14-3-3 family AT1G34760 69.4 4.6e-88 321.2
Lsi08g00896 CCT,ECH 5 228 14-3-3 family AT1G34760 70.6 1.9e-86 315.8
Lsi04g00368 . 5 212 14-3-3 family AT1G34760 69.5 9.1e-84 307.0
Lsi04g02270 . 11 256 14-3-3 family AT1G34760 61.4 2.4e-76 282.3
Lsi08g01039 . 11 206 14-3-3 family AT1G34760 60.7 1.7e-58 223.0
Lsi11g01569 . 3 242 14-3-3 family AT1G26480 80.8 4.3e-108 387.9
Lsi08g00966 . 2 271 14-3-3 family AT1G26480 70.7 5.1e-101 364.4
Lsi08g00896 CCT,ECH 2 235 14-3-3 family AT1G26480 75.7 4.0e-98 354.8
Lsi04g02235 CCT,ECH 3 232 14-3-3 family AT1G26480 74.6 9.3e-95 343.6
Lsi04g00368 . 2 219 14-3-3 family AT1G26480 73.5 2.1e-94 342.4
Lsi08g00980 CCT 8 260 14-3-3 family AT1G26480 72.0 5.1e-93 337.8
Lsi04g02246 CCT 8 247 14-3-3 family AT1G26480 73.8 1.6e-91 332.8
Lsi07g00987 . 5 259 14-3-3 family AT1G26480 71.4 4.8e-91 331.3
Lsi04g02270 . 11 254 14-3-3 family AT1G26480 64.3 1.6e-78 289.7
Lsi08g01039 . 11 207 14-3-3 family AT1G26480 60.9 2.0e-60 229.6
Lsi11g01569 . 6 236 14-3-3 family AT1G78220 51.3 1.0e-63 240.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00896 Lsi_Chr08 FPKM 0.143867 0.081562 0.188699 0.265517 0.020689 0.0 0.059684 0.048843 0.013798 0.106153