Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00899 ATGGACGCCTCACGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATTAAGATTGATCAGGAAGGGAACTCAGAGGTTTTGGAACTTGAGAAGGCTACGATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGGCTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTATCAGTCTTGAGCAAATTCGGTGTATAATCACATCCGATGAGGTTATTTTAATGAACTCCTTAGATGGATGTGCCGCACGGTACAAGTCAGAACTATGCAAGCGTCTCCAAGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAACGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCATTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTAACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACAGAGAAGAAACAAAGATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAATTTCTTTGGGAAACAGCTACCAAAATCAGCTCCTGTTTCACCAGTGGGTTCTGCTAATGGAACTTGCAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCTTGTTGAGTTCATCGACCAGCGGAGATAACATCGAACAATTGGAGATGTTGCTCGAAGCATACTTTGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAATCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCAGCAACATTCTTGGCTACGATGTTTGCGGCTTTAACAGCGGTTTTTGGCATGAATTTTGCAGACGATGTCTTCGAGCATCCGACTTCGTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTGGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTGA 1143 41.99 MDASRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVISLEQIRCIITSDEVILMNSLDGCAARYKSELCKRLQANKDQSDDLPFEFRALELALELTCSLLDTQVKGMETEIYPLLDDLASSINTINLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTEKKQRLEANIRSNLYLEANFFGKQLPKSAPVSPVGSANGTCKLQRAFSSIVNSSSLLSSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYLGFLFYFRYKKIFPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17351890 17356913 - Lsi08G008990.1 Lsi08g00899 668825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00899 380 CDD Mrs2_Mfm1p-like 17 377 IPR039204 -
Lsi08g00899 380 Gene3D Magnesium transport protein CorA, transmembrane region 92 311 - -
Lsi08g00899 380 Gene3D - 3 88 - -
Lsi08g00899 380 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 4 380 IPR039204 -
Lsi08g00899 380 Coils Coil 169 189 - -
Lsi08g00899 380 PANTHER MAGNESIUM TRANSPORTER MRS2-5 4 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01255 Lsi-Chr3:23169213 Lsi08g00899 Lsi-Chr8:17351890 3.37E-140 dispersed
Lsi05g00158 Lsi-Chr5:2309975 Lsi08g00899 Lsi-Chr8:17351890 1.37E-73 dispersed
Lsi08g00899 Lsi-Chr8:17351890 Lsi09g01276 Lsi-Chr9:20562789 2.98E-19 dispersed
Lsi08g00899 Lsi-Chr8:17351890 Lsi05g00972 Lsi-Chr5:16940257 2.30E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00899 K16075 - csv:101220835 650.973