Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00903 | ATGTCATCACAAGCCATCAACTCTCTTCTTCCCCATTTCCCCATTTCCATTTCCCAAAGCTTTGAAGCTTTTCTTCTTACCCTTCTTCTCCTCTCCATTTTCGCCTTCTTCCTCCATCCCGGCGGCTTCGCTTGGGCCATTTCCAAGTTCAAAACCACCGCTTCCACCGCCATCCCTGGCCCTTCCGGCCTCCCATTCATCGGACTCCTCCATGTCTTCACTCTTTCAACTCCTCATAAAGCTCTCTCTGCCCTTGCTAATCGATTCAAAGCATACCCATTAATGGCTTTCTCTGTTGGGTTAACTAGATTTGTGATTTCTAGTAATCCTGATGTTGCTAAAGAGATTCTTAATAGCCCTGCTTTTGCTGATAGGCCTGTGAAAGAGTCTGCTTATGAACTTCTTTTCAACAGAGCAATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAATTTGAGAAGGATTTCGGCTACTTATATGTTTAGTCCTAAGAGAATAGCTGGGTTTGAAGGGTTTAGGAAGGAAGTTGGGTTTAAAATGGTTAGGGAAATTGAGAAGTCTATGGTTTTAAAAGGGGATGTAAGGGTTAAAGAGATTCTTCATTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGGAAATGTTATGAGTTTTATAATGGTGAGAGAGATGGGGTTGAGCTTGAGGAGTTGGTTAAAGAAGGGTATGATTTGCTTGGGATTTTTAATTGGAGTGACCATTTTCCTTTATTGGGTTTCTTGGATTTACAAGGTGTGAGGAAAAGATGTAGGTGTTTGGCTTCTAAGGTTAATGTATTTGTGGGAAAAATCATTGAGGAACATAGAATGAAGAGAGAAATCAAGGGATATCATCAACAAGAACAAGAACATAATAAAGACTTTGTTGATATTCTGCTTGATTTGGAGAAAGATGATAAGCTTTCAGATTCTGACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTAGCCATACTTCTGGAATGGATTTTAGCAAGAATAGTAATACACCAAGATATCCAAACCAAAGCGCAAAATGAAATTGATTCAGTAATAGGCAAGAAATGGAGAGCCATTTCAGATAGTGATATCCAAAACCTTCCATATCTTCAAGCCATTGTGAAGGAATGTTTAAGAATGCACCCACCAGGGCCACTTCTGTCATGGGCAAGATTAGCCGTGGCAGACGTGCACGTCGACGGGAGAGTGATACCGGCGGGGACAACGGCGATGGTGAACATGTGGGCAATAACTCATAATGAGAAGGTATGGAAAGATGCTGAGAAATTTGATCCAAATAGATTCATGGAAGAGGAAATTAGTGTTATGGGAAGTGATTTGAGATTGGCTCCATTTGGAGCAGGAAGAAGAGTTTGCCCTGGAAAGGCAATGGGATTGGCTACTGTCCATCTCTGGTTGGCTCAGTTGCTTCAAGCTTACAAATGGATGCCTTGTTCTGAAGAAGCCATTAATGATGTTGACTTGTCAGAATGCCTTAAACTCTCTCTGGAAATGGAAACTCCATTGGTTTGCAGAGCTGTTCCTAGAGCTGGTTGGGGAGAGGACTGA | 1605 | 41.68 | MSSQAINSLLPHFPISISQSFEAFLLTLLLLSIFAFFLHPGGFAWAISKFKTTASTAIPGPSGLPFIGLLHVFTLSTPHKALSALANRFKAYPLMAFSVGLTRFVISSNPDVAKEILNSPAFADRPVKESAYELLFNRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFEGFRKEVGFKMVREIEKSMVLKGDVRVKEILHFGSLNNVMMTVFGKCYEFYNGERDGVELEELVKEGYDLLGIFNWSDHFPLLGFLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKREIKGYHQQEQEHNKDFVDILLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARIVIHQDIQTKAQNEIDSVIGKKWRAISDSDIQNLPYLQAIVKECLRMHPPGPLLSWARLAVADVHVDGRVIPAGTTAMVNMWAITHNEKVWKDAEKFDPNRFMEEEISVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQLLQAYKWMPCSEEAINDVDLSECLKLSLEMETPLVCRAVPRAGWGED | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 17391370 | 17393557 | - | Lsi08G009030.1 | Lsi08g00903 | 668829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00903 | 534 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506|GO:0016705 | |
Lsi08g00903 | 534 | PRINTS | P450 superfamily signature | 330 | 347 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | P450 superfamily signature | 384 | 395 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | P450 superfamily signature | 471 | 482 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | Pfam | Cytochrome P450 | 59 | 509 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PANTHER | CYTOCHROME P450 78A5 | 15 | 528 | - | - | |
Lsi08g00903 | 534 | SUPERFAMILY | Cytochrome P450 | 58 | 528 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PANTHER | CYTOCHROME P450 78A7-RELATED | 15 | 528 | - | - | |
Lsi08g00903 | 534 | Gene3D | Cytochrome P450 | 46 | 524 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | E-class P450 group I signature | 319 | 336 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | E-class P450 group I signature | 339 | 365 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | E-class P450 group I signature | 383 | 401 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | E-class P450 group I signature | 425 | 449 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi08g00903 | 534 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00903 | Lsi-Chr8:17391370 | Lsi10g00681 | Lsi-Chr10:9538744 | 4.43E-159 | dispersed | |
Lsi04g00679 | Lsi-Chr4:6214116 | Lsi08g00903 | Lsi-Chr8:17391370 | 2.36E-176 | transposed | |
Lsi09g01657 | Lsi-Chr9:24994503 | Lsi08g00903 | Lsi-Chr8:17391370 | 2.32E-180 | transposed | |
Lsi02g00131 | Lsi-Chr2:1069273 | Lsi08g00903 | Lsi-Chr8:17391370 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00903 | K20619 | - | csv:101221468 | 978.008 |