Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00903 ATGTCATCACAAGCCATCAACTCTCTTCTTCCCCATTTCCCCATTTCCATTTCCCAAAGCTTTGAAGCTTTTCTTCTTACCCTTCTTCTCCTCTCCATTTTCGCCTTCTTCCTCCATCCCGGCGGCTTCGCTTGGGCCATTTCCAAGTTCAAAACCACCGCTTCCACCGCCATCCCTGGCCCTTCCGGCCTCCCATTCATCGGACTCCTCCATGTCTTCACTCTTTCAACTCCTCATAAAGCTCTCTCTGCCCTTGCTAATCGATTCAAAGCATACCCATTAATGGCTTTCTCTGTTGGGTTAACTAGATTTGTGATTTCTAGTAATCCTGATGTTGCTAAAGAGATTCTTAATAGCCCTGCTTTTGCTGATAGGCCTGTGAAAGAGTCTGCTTATGAACTTCTTTTCAACAGAGCAATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAATTTGAGAAGGATTTCGGCTACTTATATGTTTAGTCCTAAGAGAATAGCTGGGTTTGAAGGGTTTAGGAAGGAAGTTGGGTTTAAAATGGTTAGGGAAATTGAGAAGTCTATGGTTTTAAAAGGGGATGTAAGGGTTAAAGAGATTCTTCATTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGGAAATGTTATGAGTTTTATAATGGTGAGAGAGATGGGGTTGAGCTTGAGGAGTTGGTTAAAGAAGGGTATGATTTGCTTGGGATTTTTAATTGGAGTGACCATTTTCCTTTATTGGGTTTCTTGGATTTACAAGGTGTGAGGAAAAGATGTAGGTGTTTGGCTTCTAAGGTTAATGTATTTGTGGGAAAAATCATTGAGGAACATAGAATGAAGAGAGAAATCAAGGGATATCATCAACAAGAACAAGAACATAATAAAGACTTTGTTGATATTCTGCTTGATTTGGAGAAAGATGATAAGCTTTCAGATTCTGACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTAGCCATACTTCTGGAATGGATTTTAGCAAGAATAGTAATACACCAAGATATCCAAACCAAAGCGCAAAATGAAATTGATTCAGTAATAGGCAAGAAATGGAGAGCCATTTCAGATAGTGATATCCAAAACCTTCCATATCTTCAAGCCATTGTGAAGGAATGTTTAAGAATGCACCCACCAGGGCCACTTCTGTCATGGGCAAGATTAGCCGTGGCAGACGTGCACGTCGACGGGAGAGTGATACCGGCGGGGACAACGGCGATGGTGAACATGTGGGCAATAACTCATAATGAGAAGGTATGGAAAGATGCTGAGAAATTTGATCCAAATAGATTCATGGAAGAGGAAATTAGTGTTATGGGAAGTGATTTGAGATTGGCTCCATTTGGAGCAGGAAGAAGAGTTTGCCCTGGAAAGGCAATGGGATTGGCTACTGTCCATCTCTGGTTGGCTCAGTTGCTTCAAGCTTACAAATGGATGCCTTGTTCTGAAGAAGCCATTAATGATGTTGACTTGTCAGAATGCCTTAAACTCTCTCTGGAAATGGAAACTCCATTGGTTTGCAGAGCTGTTCCTAGAGCTGGTTGGGGAGAGGACTGA 1605 41.68 MSSQAINSLLPHFPISISQSFEAFLLTLLLLSIFAFFLHPGGFAWAISKFKTTASTAIPGPSGLPFIGLLHVFTLSTPHKALSALANRFKAYPLMAFSVGLTRFVISSNPDVAKEILNSPAFADRPVKESAYELLFNRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFEGFRKEVGFKMVREIEKSMVLKGDVRVKEILHFGSLNNVMMTVFGKCYEFYNGERDGVELEELVKEGYDLLGIFNWSDHFPLLGFLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKREIKGYHQQEQEHNKDFVDILLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARIVIHQDIQTKAQNEIDSVIGKKWRAISDSDIQNLPYLQAIVKECLRMHPPGPLLSWARLAVADVHVDGRVIPAGTTAMVNMWAITHNEKVWKDAEKFDPNRFMEEEISVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQLLQAYKWMPCSEEAINDVDLSECLKLSLEMETPLVCRAVPRAGWGED 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17391370 17393557 - Lsi08G009030.1 Lsi08g00903 668829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00903 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Lsi08g00903 534 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS P450 superfamily signature 471 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 Pfam Cytochrome P450 59 509 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PANTHER CYTOCHROME P450 78A5 15 528 - -
Lsi08g00903 534 SUPERFAMILY Cytochrome P450 58 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PANTHER CYTOCHROME P450 78A7-RELATED 15 528 - -
Lsi08g00903 534 Gene3D Cytochrome P450 46 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS E-class P450 group I signature 425 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00903 534 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00903 Lsi-Chr8:17391370 Lsi10g00681 Lsi-Chr10:9538744 4.43E-159 dispersed
Lsi04g00679 Lsi-Chr4:6214116 Lsi08g00903 Lsi-Chr8:17391370 2.36E-176 transposed
Lsi09g01657 Lsi-Chr9:24994503 Lsi08g00903 Lsi-Chr8:17391370 2.32E-180 transposed
Lsi02g00131 Lsi-Chr2:1069273 Lsi08g00903 Lsi-Chr8:17391370 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00903 K20619 - csv:101221468 978.008