Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00907 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGGGTTTCAAAAAAAATATCTCCGATACGAATAACCAGTCGAACGAGTATGGAGAAAATACTTGAACGATATGAGAGATATTCTTACGTGGGGAGGCAGCAAATTGCAGCTTCTGAATCTGAATTTTCTCATGAAAATTGGACTCTGGAATACTATAGACTTAATCATTATATGGGAGAAGATTTGGATTCATTGAGTGTCAAAGAACTGCAAAACTTAGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCCAGAAAAGAAAGAGCAATACAGGAGCAAAATGCCCTACTGGCCAAGCAGGGAAGAAAAGAACACTGTAAATCATAC 516 38.18 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSRVSKKISPIRITSRTSMEKILERYERYSYVGRQQIAASESEFSHENWTLEYYRLNHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKERAIQEQNALLAKQGRKEHCKSY 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17449704 17455483 + Lsi08G009070.1 Lsi08g00907 668833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00907 172 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
Lsi08g00907 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi08g00907 172 Coils Coil 131 151 - -
Lsi08g00907 172 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Lsi08g00907 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi08g00907 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi08g00907 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi08g00907 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi08g00907 172 Pfam K-box region 115 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi08g00907 172 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 - -
Lsi08g00907 172 CDD MADS_MEF2_like 2 94 IPR033896 GO:0000977|GO:0045944
Lsi08g00907 172 ProSiteProfiles K-box domain profile. 94 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi08g00907 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi08g00907 172 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi08g00907 172 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00959 Lsi-Chr7:12284425 Lsi08g00907 Lsi-Chr8:17449704 7.32E-63 dispersed
Lsi08g00907 Lsi-Chr8:17449704 Lsi07g00957 Lsi-Chr7:12109274 1.06E-40 dispersed
Lsi08g00907 Lsi-Chr8:17449704 Lsi02g00138 Lsi-Chr2:1135478 1.38E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25771 PF01486 K-box 5.50E-14 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00907 K09264 - csv:101219414 242.276