Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi08g00926 | ATGTCCTCCGCCCATTCCCCTTCCACCGCCGCCACCCCTGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCTTGCATTCACGTCAAATCCTCCCGCCCTCGCTCTAGATCCTCTACCTCTCTCCCTTCTCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTAGTCCTCGGAGAGAGTCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAACCCTACGATTCTCTCCGCTGCATTCCCGATTGTCGCCATTGTTTTCACTCCGATTGCGTCGATGAATGGCTACGTGTGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCGACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA | 498 | 56.83 | MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 17650994 | 17651491 | + | Lsi08G009260.1 | Lsi08g00926 | 668852 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi08g00926 | 165 | SUPERFAMILY | RING/U-box | 99 | 147 | - | - | |
| Lsi08g00926 | 165 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 19 | 147 | - | - | |
| Lsi08g00926 | 165 | Pfam | Ring finger domain | 100 | 142 | IPR001841 | - | |
| Lsi08g00926 | 165 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
| Lsi08g00926 | 165 | PANTHER | RING-H2 FINGER PROTEIN ATL69-RELATED | 19 | 147 | - | - | |
| Lsi08g00926 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
| Lsi08g00926 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 147 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01180 | Lsi-Chr1:10032251 | Lsi08g00926 | Lsi-Chr8:17650994 | 8.28E-40 | dispersed | |
| Lsi05g00089 | Lsi-Chr5:1608195 | Lsi08g00926 | Lsi-Chr8:17650994 | 1.82E-27 | dispersed | |
| Lsi05g02075 | Lsi-Chr5:27642737 | Lsi08g00926 | Lsi-Chr8:17650994 | 5.10E-35 | dispersed | |
| Lsi07g00719 | Lsi-Chr7:7751735 | Lsi08g00926 | Lsi-Chr8:17650994 | 6.24E-32 | dispersed | |
| Lsi08g00926 | Lsi-Chr8:17650994 | Lsi08g00991 | Lsi-Chr8:18386724 | 1.22E-17 | dispersed | |
| Lsi08g00926 | Lsi-Chr8:17650994 | Lsi03g01806 | Lsi-Chr3:29493392 | 5.41E-38 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi08g00926 | - | - | cmos:111462423 | 276.944 |