Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00928 ATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTGTATTCCTTTTAGGTATAGAAGTTCCGATGGCAGTAGTGATGAAATTTCAGATAAAGAAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTCTTGTTCCCAAAGGGAGGCTGGGAGAATGACGAGACAGTGGAGGAGGCTGCTGTAAGGGAAGCTATTGAAGAAGCTGGTGTTCGTGGTGAACTTATGGGCTATGCAATATTCCAGACACGCCTTATGGAGAGAGATTTTGTTGGTGTGAGAGCTGAAGAAACAGTGGGGAAGTCAAGTCCTAGGGGAGAGAAGTGTTCCCAATCCAACAATCAGTCTAAACATAAGGCGTACAGAGCTATTTATTTTGTCATTGTCAATTTAGATTTAGAAGGACCGAGGAAGGATTACTTTGCTTCTCCAGAACAATGTCGGTCAGAAAAGATGCAGGCCAACCCTAAGGCCCCGGAAACTTATGGTGGGAGATATGAAGTGGACGTCCAGGAGGATATTGAGCCTATTACCTGGCTGATAGATATGACTAAATGCCATCTTCAGGGAAATTGGAGAGCTATTTTCTCACCGAGGAAAAAGTTTTGCTGGAATGAAGTGAACTATGATGCTTTTGAAGGGACAAGAGAAGTTTATCTTTGGAAGATAACTCTTCTGTTAATAGGATGCTTTGTTTTTCCCGTTTTACCTCCTCATTTTGAGTATCGAAGTATGACATGGGAGAATGCCTCGCCCTCCCCTCCCTCTTTTCTATATCTTGCTATTTTGTTTGCTGAAATGATTTCTTATCACAAAAGCTGGCATATCCAAGAGCATTATCTTATTGATAATTCAACCATAAGCAGTTGGTTAATGGATAAGGGATATAAAGATGACTCTCAACATTTGGAGGTCAAAGTAGAACTTCTTATGACTTTACTTGGTAATAATGTCAGATTAGTTATTGAATGTTACATTTATGGTTTCTTGGGAGACTATCACTTCAAGAGTAAAACACAGCAAGATGAGTTTAGTCCGGATGGATTGTGTAGAGCAGCAATGTATGCTTTATTTGTCAATGAGGAGCTTGAGTTCTGGCCAGAGCAAAACACGAGAAACAGAAGTTGGATCCAAGCAATGTATGCACATTACGAAGTACTGTGCATACTAATGAACATCTACAGAGGATTGTTTTCAAGAGTCCCTTTTCCCCTTCGCCAACCAATCATGAAGAATCAAGTAGTAGAACTAACAGCGATGTTCAGGATTACGTCAGACCCAAAAATTAACAAATGTTTCATAAATAAGTATAGATTGTATTTTTCACGTTCATGTCTTGTTTTAATTTTAGACGACTCCGGTATCCCTCTGATGGCTGGAGTAATATTTGGAGTGGATCTGTATTTTTCTTTAGTTGATCTTCTCTTGCCTGTTGCTCTTTCTATATATGAAGGATACTGCAACCTTTTTCTAATATTTTGTTATTTTGGTATCTTAATCCTTCTGCTATCAGACAATATAAAACAGGAAAAGTATTACACTTTGAAGTTGATTTGGTTCATTGATTTGAATTGCACAGGAAGACGGTCAATCCACTCTTATCGCATTTCTGATTTGGGACATCATTACTTAAAACCTAATGAATTACACCATGCCAAGAAGAGTGCAATCAAATTAAATATGAATATGCAAATATGTGGTTCCTCAACTTATAGTGGAAAGGATACTCCTTTTGTTTTAGCTAATTATTGTTGCCATATTGATTGGTATTATATAAACAAGAAGTGGGCTTCCATGGCTACTGACGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGCCTGATAGGGGCCAACTTACTCTTGCTGTGGCTTCTGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGCCGTCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGATTGAGGAAAAAAGCGTATGTTCAACAGTTAGAGAGCAGTCGATTAAAGTTGACACAACTCGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGTTCAGGGGCCATGGCATTTGATGTAGAATATGCCCGATGGCTTGAAGATCACAACCGTCAATTGAACGAATTGAGATCGGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTTGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGGCTCAAGGGAAATGCAGCAAAGGTTGACGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCTGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAATCATCGCAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTGTCGAGTGGAGCGCTCGGCTCCTCCGGTTCGTCAGGGAACGTCGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTTGGGACCCTCGAGGGCTTTATACGCCAAGCCGATAATCTGCGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCATACACGACTACTTCTCCAGGCTACGAGCTCTCAGTTCGCTTTGGCTTGCTCGTCCCAGAGAATAA 2808 42.52 MSDLVARTGRHQQRYDAGCRLIAGCIPFRYRSSDGSSDEISDKEVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGELMGYAIFQTRLMERDFVGVRAEETVGKSSPRGEKCSQSNNQSKHKAYRAIYFVIVNLDLEGPRKDYFASPEQCRSEKMQANPKAPETYGGRYEVDVQEDIEPITWLIDMTKCHLQGNWRAIFSPRKKFCWNEVNYDAFEGTREVYLWKITLLLIGCFVFPVLPPHFEYRSMTWENASPSPPSFLYLAILFAEMISYHKSWHIQEHYLIDNSTISSWLMDKGYKDDSQHLEVKVELLMTLLGNNVRLVIECYIYGFLGDYHFKSKTQQDEFSPDGLCRAAMYALFVNEELEFWPEQNTRNRSWIQAMYAHYEVLCILMNIYRGLFSRVPFPLRQPIMKNQVVELTAMFRITSDPKINKCFINKYRLYFSRSCLVLILDDSGIPLMAGVIFGVDLYFSLVDLLLPVALSIYEGYCNLFLIFCYFGILILLLSDNIKQEKYYTLKLIWFIDLNCTGRRSIHSYRISDLGHHYLKPNELHHAKKSAIKLNMNMQICGSSTYSGKDTPFVLANYCCHIDWYYINKKWASMATDGSPRTDISTDGDTDEKSRRPDRGQLTLAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKVDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17665259 17688757 - Lsi08G009280.1 Lsi08g00928 668854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00928 935 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 605 935 - -
Lsi08g00928 935 Pfam Seed dormancy control 732 807 IPR025422 GO:0006351|GO:0043565
Lsi08g00928 935 SMART brlzneu 656 735 IPR004827 GO:0003700|GO:0006355
Lsi08g00928 935 ProSitePatterns Nudix box signature. 63 84 IPR020084 GO:0016787
Lsi08g00928 935 Gene3D - 659 710 - -
Lsi08g00928 935 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 658 702 IPR004827 GO:0003700|GO:0006355
Lsi08g00928 935 ProSiteProfiles Nudix hydrolase domain profile. 18 208 IPR000086 -
Lsi08g00928 935 ProSiteProfiles DOG1 domain profile. 715 932 IPR025422 GO:0006351|GO:0043565
Lsi08g00928 935 MobiDBLite consensus disorder prediction 615 660 - -
Lsi08g00928 935 Coils Coil 679 706 - -
Lsi08g00928 935 Pfam bZIP transcription factor 660 700 IPR004827 GO:0003700|GO:0006355
Lsi08g00928 935 PANTHER TRANSCRIPTION FACTOR TGA9 605 935 - -
Lsi08g00928 935 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 663 678 IPR004827 GO:0003700|GO:0006355
Lsi08g00928 935 SUPERFAMILY Leucine zipper domain 660 703 IPR046347 GO:0003700|GO:0006355
Lsi08g00928 935 MobiDBLite consensus disorder prediction 623 638 - -
Lsi08g00928 935 SUPERFAMILY Nudix 9 97 IPR015797 -
Lsi08g00928 935 Pfam NUDIX domain 44 91 IPR000086 -
Lsi08g00928 935 CDD bZIP_HBP1b-like 660 712 - -
Lsi08g00928 935 Coils Coil 726 746 - -
Lsi08g00928 935 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00016 Lsi-Chr4:217909 Lsi08g00928 Lsi-Chr8:17665259 0 dispersed
Lsi07g00186 Lsi-Chr7:2038467 Lsi08g00928 Lsi-Chr8:17665259 4.38E-69 dispersed
Lsi08g00395 Lsi-Chr8:10972139 Lsi08g00928 Lsi-Chr8:17665259 2.58E-143 dispersed
Lsi08g00928 Lsi-Chr8:17665259 Lsi09g00941 Lsi-Chr9:11960178 1.25E-06 dispersed
Lsi08g00928 Lsi-Chr8:17665259 Lsi10g01166 Lsi-Chr10:15933908 2.56E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25774 PF14144 DOG1 2.20E-30 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00928 K14431 - csv:101213210 558.525