Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00930 ATGGGGAATTTTATGCTCAAACCTCCTCTGCGTCTCTTTGCTCAAGACCTCCGGAAGTTCACAGAGAACGGCACCACAATTGGCCTCAAATTCCTCTCTTCTCTCACTCAAATCCCTCAATCAACCAACGATCGGACAGTCGATTACCTCGTCCACACCCTCGGCCTCTCCAAGGACTCAGCTCTCGCCGCTGCCAAGCGAATCCATCTCAAACCAACCGCAGATCCCGACTCCGTTCTTGCTCTCTTCAACGCCCATGGATTCACACCCTCCCACACTGCCAGCATCTTTTACAGACACCCCAGTCTCCTCCTTGCTGATCCCGACACAACACTCAAGCCCAAGTTCGAATTTCTCTCTCAAAACGGTATATCTGGTAATGTTCTCGTCGACGTGATCTCTAGGGATCCATCAATTCTCAGAAGGAGCTTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCAGAAATTTCTTTGGTTCTACTGATGGTATTGTCTCGCTCTTTTCTACTAGACGTGGGACTTGGGTTTTGCGCCAGTTTTCCGAATCTGTGGCTCCCAATATAGAAGTACTGAGAGCTAATGGTGTGCCCGATTCAAACATTGCTAAAATGATTTTGTTGCGCCCGAGGACACTCTCCAGGGATGCGGAAGAGTTTATTGACATTGTCAAGAAGACAAAGGAAACGGGGTTTAATCCTTCGAGCTTGATGTTTATTCATGGGCTGTGTACACTTTCAGGGATGAGAAAGGACAAATGGTTATCGAAACTGCATATTTTTAAAAGTTTTGGATGGTCAGAGGAGCAGTTTCAATCTTTATTTCTCAAGCAGCCCATGTTTATGAATTCGTCTGGGGAGCAAATTAAGAGGGCATTGGATTTCTTTATGAACAAATTAGACTGGACACCGGAAGAAATTTCCAAGTACCCAACTGTGCTCATTCTTAGTTTTGAAAAGAGGATAATGCCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACGAGTGTTGGCAGAGCATTTTTGATTTGCGAGGATGAGTTCTTGGTCAAGTTTGTGATGCAGTATCTTTCAGAAGATCCCCATCTATTAAAGATGTACCAGGAGAAGATGGCAATATTATGA 1143 44.62 MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVMQYLSEDPHLLKMYQEKMAIL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17704811 17705953 - Lsi08G009300.1 Lsi08g00930 668856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00930 380 PANTHER CGI-12 PROTEIN-RELATED 8 377 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 Gene3D Transcription termination factor 3, mitochondrial 165 371 IPR038538 -
Lsi08g00930 380 PANTHER - 8 377 - -
Lsi08g00930 380 Pfam mTERF 251 354 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 Pfam mTERF 80 237 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 SMART mt_12 130 162 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Lsi08g00930 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00930 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101219073 562.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00187 Lsi-Chr7:2048644 Lsi08g00930 Lsi-Chr8:17704811 3.24E-40 dispersed
Lsi07g00189 Lsi-Chr7:2061543 Lsi08g00930 Lsi-Chr8:17704811 8.54E-42 dispersed
Lsi08g00930 Lsi-Chr8:17704811 Lsi09g01413 Lsi-Chr9:22109545 8.26E-55 dispersed
Lsi08g00930 Lsi-Chr8:17704811 Lsi05g01522 Lsi-Chr5:23026975 3.51E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g391 . . . . . . . . . . . . . . . . Cpe07g00108 . . . . . . . . . . . . . . Cone4ag1349 Cone7ag1582 . . . . . . . . . . . . . . . . . Cma12g00128 . . . . . . . . . . . . . . . . . . . Lsi08g00930 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014402 0 0 0 0 0 0 0 0 0 2 0 0 2 1 2 2 0 3 3 0 2 0 0 1 1 1 1 0 1 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25775 PF02536 mTERF 1.40E-17 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00930 Lsi_Chr08 FPKM 18.355595 20.244049 25.630234 23.61397 13.930261 16.403942 12.368684 21.644957 21.079891 20.017347