Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00937 ATGAGCAGTTTGAGGACGGTTTGCAGGCCTCATGCCATGTTTTCTTCCTTCCTGTTTAGCAGCAGATGCCAGCCTATGCCCACTGTTTCGTTTCGGAACCCTAATAACAAGCGTCGCTTTTCACTTTTCTCTCCCACCTTCAATTCCTCCTCAGGCTTTTCTCGTACCGAGAAATGGTTTCGTATCAATCAGCGGAGGACGCTGGCCATGGCTTCCAATTGGACTAACGAAAAATCTCCCTATGAAACTCTCGTTTATGATGGTAGAGGAACTCTTGAAGAAGGAGAAACAGCTGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAGTTGCTCATAGATGATGAGAAGCGGAGGCAGTATGATGTAGATAACCGAGTTAATCCAATGAAGGCATCTCAAGCATGGATGGAATGGCTTATCAAAAAGCGCAAAGCTTTTGATCAGCGGGGTGACATGGCAATAGCAGCTTGGGCTGAGCAACAGCAGCGTGAGATGAATCTACGGGCTCGGCGCCTTTCTCGATCAAAGGTTGATCCAGACGAAGAGAGAAGGTTACTGGCAAAAGAAAAGAAGGCGTCAATAGAGTATTTTAACAGCACACTGAAGCGACACACACTTATCTTGAAGAAGAGGGATTTAATGCGAAAAAAAGCAGAGGAGGAAAAGAAGAAGGTAATAAGCCAACTTTTAGCTGAGGAGGGCCTCGAGCTCGATACAGACGAGGATGACAACCTGTAG 741 45.88 MSSLRTVCRPHAMFSSFLFSSRCQPMPTVSFRNPNNKRRFSLFSPTFNSSSGFSRTEKWFRINQRRTLAMASNWTNEKSPYETLVYDGRGTLEEGETAEARFIKIQAAYELLIDDEKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQREMNLRARRLSRSKVDPDEERRLLAKEKKASIEYFNSTLKRHTLILKKRDLMRKKAEEEKKKVISQLLAEEGLELDTDEDDNL 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17848223 17851194 + Lsi08G009370.1 Lsi08g00937 668863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00937 246 ProSitePatterns Nt-dnaJ domain signature. 102 121 IPR018253 -
Lsi08g00937 246 SUPERFAMILY Chaperone J-domain 94 123 IPR036869 -
Lsi08g00937 246 Gene3D DnaJ domain 73 123 IPR036869 -
Lsi08g00937 246 PANTHER CO-CHAPERONE PROTEIN DJLA 86 244 - -
Lsi08g00937 246 PANTHER LD30543P 86 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00937 - - - csv:101214898 405.601
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00937 Lsi_Chr08 FPKM 5.386555 4.969007 5.031479 5.144566 13.041595 10.516322 12.991898 7.348853 6.917266 7.498384