Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00938 ATGGATGTAAACGGACTGCAAAAAGCACAAGAGGCCCTAGATGCGGAAATCAAATCATTTTTTGATTCAGCTCCGCCTTTGAGGAATATTGAGGATATCAGCAAAGATTTGAAAAAATTTGTTGAAATGAATTCACCACAAGCTGGCAAGGGAACCCGTCAACCATATTGCAGTTTGCTTCCTGATGATCCATTTCTGGAGTGTTTTGAGTTCACTCAGGAGTCGGGCATACAAGTGCGCCAGCCTTATTCGGAAGCAGTTGAGAAGGCAATCAGCAAGCATCATGCTGCAATAGCAGATGGCACACTTCTGAAACTTCCTTTTACAACGATTTTTGAGTATCTTCAGATGTTGCACATGGTTGCAATATCATTGAGGAGTATTGGAGCCCATGCACTCTTTTATCTTGCTGCAGCTGTCTCTGACTTTTATGTTCCATGGGAGAGCATGGCAGAGCACAAGATTCAGTCAGGATCAGGGCCTTTGGACATGCGACTGGTTCAGGTGCCAAAGATGCTATCAGGGCTGAGGAGTGAGTGGGCTCCAAGGGCGTACTGTATATCTTTCAAGACCACACGGTCCATAGGTCCATGGGAGAACTGGAATGGAGTTTCAAAGAACCATTCTTCTACTGCACTTCAATTGCTCAAAGGCGAGTTGAATGGATTTAAGGACATCTTGGTCGTAGTTAAGACAATTAAGAAGCTTACATTGGATAAAAGTCAAGAAAGGGAAATGGAGGAGCTAGAGACTGATGTAAAAATCCTCTTGGAGAAGGCAAATGCAGCCCTGAAAAAGTACAAGATGCATATGGTCATTGCAAATGAACTTTTGACCCGGAAAGAGGAGGTGACTCTTGTTACTGGAAATGAAAAGATTCATGTTCGGCGTGACCCGAAACTGGTTGGCGATGAAGTGGAGAAACATATTGTCAAACATATTGTCGAGAAGCATTCTGCTTACGTGGACAATTTCGACCATAAAGTCTCAAGTGCCAGTGAATCATAG 1008 43.55 MDVNGLQKAQEALDAEIKSFFDSAPPLRNIEDISKDLKKFVEMNSPQAGKGTRQPYCSLLPDDPFLECFEFTQESGIQVRQPYSEAVEKAISKHHAAIADGTLLKLPFTTIFEYLQMLHMVAISLRSIGAHALFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSGLRSEWAPRAYCISFKTTRSIGPWENWNGVSKNHSSTALQLLKGELNGFKDILVVVKTIKKLTLDKSQEREMEELETDVKILLEKANAALKKYKMHMVIANELLTRKEEVTLVTGNEKIHVRRDPKLVGDEVEKHIVKHIVEKHSAYVDNFDHKVSSASES 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17851552 17856108 - Lsi08G009380.1 Lsi08g00938 668864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00938 335 Pfam DNA / pantothenate metabolism flavoprotein 113 192 IPR007085 -
Lsi08g00938 335 Coils Coil 239 266 - -
Lsi08g00938 335 Gene3D - 47 325 IPR035929 -
Lsi08g00938 335 PANTHER PHOSPHOPANTOTHENATE-CYSTEINE LIGASE-LIKE PROTEIN 248 324 - -
Lsi08g00938 335 PANTHER PHOSPHOPANTOTHENATE-CYSTEINE LIGASE-LIKE PROTEIN 50 240 - -
Lsi08g00938 335 PANTHER CORNICHON-RELATED 248 324 - -
Lsi08g00938 335 PANTHER CORNICHON-RELATED 50 240 - -
Lsi08g00938 335 SUPERFAMILY CoaB-like 249 321 IPR035929 -
Lsi08g00938 335 PANTHER PHOSPHOPANTOTHENATE-CYSTEINE LIGASE-LIKE PROTEIN 7 47 - -
Lsi08g00938 335 SUPERFAMILY CoaB-like 50 191 IPR035929 -
Lsi08g00938 335 PANTHER CORNICHON-RELATED 7 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00938 K01922 PPCS, COAB; phosphopantothenate---cysteine ligase (ATP) [EC:6.3.2.51] - csv:101214416 383.259
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g344 . . . . . . . . . Cmo12g00109 . . . . . . Cpe07g00115 Bhi04g00720 . . . . . . Cla08g01082 Cam08g1533 Cec08g1109 Cco08g1236 Clacu08g1238 . Cre08g1019 . . . . . . . Cme03g01492 . . . Bda01g01398 . . . . . . . Cma12g00135 . . . . . . . . . . . . . . . . . . . Lsi08g00938 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004404 1 4 1 1 1 3 1 3 1 1 3 3 1 1 1 1 3 2 1 1 1 1 0 1 1 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00938 Lsi_Chr08 FPKM 19.081871 24.955799 4.059412 4.692441 18.455124 14.673567 15.735598 5.254699 5.915438 4.472146