Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00943 ATGGCATCGGGCGCTTCTGATTTCAAGTTGCAGATACCAAGTAAGCCCCCGCCGCCTCCGCGGCCACCTCCTCCTCCTCCGCCGCCCTTCGCCACTGAGTTTTCAGAAAATTTGGACGAATTGAAGATTCCGTTCTTCAAATCCAGCTCTCGGAGGCCAAGAGGTGATACCTGTGTCGTCTCCGTCTTCGTGCTTCTTCATATGGTGGCGTTCATCGCCATGATGTTAGTTAATGACTGCTGGTCTAATTCTCATCAAGAATGTGCGTTCGGAGTACTCGGAAGGATGTCGTTTCAGCCGCTTGCGGAGAATCCTCTTCTTGGCCCTTCCGCTTCCACGCTAGAGAAGATGGGAGGTCTTCGGCGAAAGAGCTTGACAGAATATCGACAAATTTGGCGTTTGTTTACATTTCCTTGTATGCATGCTGGACTCATCCACCTTGTGATTAATCTTAGCAGCGTAATCTTTGTAGGGATTCAATTAGAACTTGAGTATGGTCCAGTACGGACTGGGATTATCTATCTACTCTCTGGTTATACTGGCACCTTGGTGGCTGCACTTTTTGTTCAAAACAGCCCGTCAGTTGGTTCATCTGGAGCTCTATTTGGTTTACTTGGAGCTATGATTTCTGGGATAATGAGGAACTGGAAACTTTACACTGATAGATTTTTAGCTCTGGGATCAGTTCTTGTTGTTTTCGCTATCAATTTCGGACTTGGTCTGCTACCTTATATAGACAATTTTGCAAATGTTGGAGGCTTAGTATCGGGTTTACTTCTCGGTTTCATGATTTTGTTCACTCTGAAGCATAGACAAGAAAAGGCTCAAACTAAAGGATACTCTTTGAGTTATAGTTTCAAGAATTATTTCAATTTGATAATGAAACAGAAGCTGGACAAACCGATACTGAGAAGCGCGTCTCTTCTTCTCTTTGTTCTTTTATTTTCTGGATCTCTAGTTGGAGTTATTTTTGAATTTGACTTGAACCAGTATTGCATATGGTGTCGTTATATCGACTGTGTTCCATTCAAGAAATGGCACTGCAAGGATTTGGCATTTTCTTGTGCGACAATGGTTAGCGATCAAGAACTGACATTGACATGCTTGTCTACTGGCAACTTCAAGGTATACCCTTTCACTGATATCTCCCAGTCGAGGATAAACGACTTGTGTGGTCTCATATGTTCATAA 1191 43.41 MASGASDFKLQIPSKPPPPPRPPPPPPPPFATEFSENLDELKIPFFKSSSRRPRGDTCVVSVFVLLHMVAFIAMMLVNDCWSNSHQECAFGVLGRMSFQPLAENPLLGPSASTLEKMGGLRRKSLTEYRQIWRLFTFPCMHAGLIHLVINLSSVIFVGIQLELEYGPVRTGIIYLLSGYTGTLVAALFVQNSPSVGSSGALFGLLGAMISGIMRNWKLYTDRFLALGSVLVVFAINFGLGLLPYIDNFANVGGLVSGLLLGFMILFTLKHRQEKAQTKGYSLSYSFKNYFNLIMKQKLDKPILRSASLLLFVLLFSGSLVGVIFEFDLNQYCIWCRYIDCVPFKKWHCKDLAFSCATMVSDQELTLTCLSTGNFKVYPFTDISQSRINDLCGLICS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17904841 17907751 - Lsi08G009430.1 Lsi08g00943 668869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00943 396 Pfam Rhomboid family 127 265 IPR022764 GO:0004252|GO:0016021
Lsi08g00943 396 PANTHER RHOMBOID-RELATED 5 395 IPR002610 GO:0004252|GO:0006508|GO:0016021
Lsi08g00943 396 MobiDBLite consensus disorder prediction 1 32 - -
Lsi08g00943 396 Gene3D - 55 267 IPR035952 -
Lsi08g00943 396 SUPERFAMILY Rhomboid-like 59 271 IPR035952 -
Lsi08g00943 396 MobiDBLite consensus disorder prediction 12 32 - -
Lsi08g00943 396 PANTHER RHOMBOID-LIKE PROTEIN 8 5 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00943 - - - csv:101216357 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00867 Lsi-Chr3:14672011 Lsi08g00943 Lsi-Chr8:17904841 1.92E-11 dispersed
Lsi05g01251 Lsi-Chr5:20306257 Lsi08g00943 Lsi-Chr8:17904841 1.45E-65 dispersed
Lsi07g00988 Lsi-Chr7:13575119 Lsi08g00943 Lsi-Chr8:17904841 9.76E-08 dispersed
Lsi07g01380 Lsi-Chr7:20075408 Lsi08g00943 Lsi-Chr8:17904841 2.31E-26 dispersed
Lsi07g01382 Lsi-Chr7:20088659 Lsi08g00943 Lsi-Chr8:17904841 6.86E-10 dispersed
Lsi08g00943 Lsi-Chr8:17904841 Lsi09g00298 Lsi-Chr9:3077177 4.17E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g343 . . . . Bpe02g00087 . . Bma01g02631 Cmo05g00503 . . . . . . . . . . . . . . . Cla08g01086 Cam08g1538 Cec08g1112 Cco08g1239 Clacu08g1241 . Cre08g1022 . . . . . . . Cme03g01498 . . . . . . . . . . . . Cma05g00480 Car05g00428 . Cpe11g00420 . . . . . . . . . . . . . . . Lsi08g00943 . Chy03g01009 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012013 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00943 Lsi_Chr08 FPKM 5.044254 4.97457 6.50884 4.674111 40.805157 35.145576 43.337383 9.950775 12.19495 10.367123