Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00944 ATGATGGACCCGAATCTTTGGCGTGCTTTTGCCGGAAATTCTGCCCATATCCACACTGTCGGTTCTGAGGTTTACTATTTCGTTCAAGGACATGTCGAACAAGCTACTTACGTTCCGACACTTTCTCGGTCTGTTCTTTCTAACCCTACTACTAAATGTATCGTTACTGCTGCTGATTATAGTGCCGATTCTCTTTCTGATGAGGTCCGCCTTAAGTTGAATCTTAATCCAATTCGTCCTGGTGAGAGTGGGTCTGAAGTAGTTTCTGAATTTGGTTGTTCTGATGATGGTAGTGGGAAGATGAATAGGATTGAGAAGTTTGCTAAGATTCTCACGTCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTATTGTGCCGATTCTATTTTTCCTCCGTTGAATTATCAGGTTGAACCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTCACTACTGGGTGGAGTAAGTTTGTGAATCATAAGAAGTTGGTTGCGGGTGATGCCGTCATTTTCGCGAGGAATTCCAGTGGGGATATGTTTGTTGGCATTCGTCGCGTCACAAGCACAAGGGCTATTATAGGTGGTGATTGCAGCAGATGGAATAGCCAGATTGGTGGAGGAGGAAGGTACAGTGTAGAGGAGAAACGTTCTGGAGATGGAGGAAGTGATAATTTCTCCCGGAGTAATATTGGGAAGGTGCCGGCCGAGGCGGTTGCTAACGCTGCGGAATTGGCCGCTCAATTTAAGCCATTCGAGGTGGTTTATTATCCTAGGGCTGGTTTTTCCGAGTTTGTTGTTCCTGCTGAGAAAGTGAACAAGTCGATGAATTATCAGTGGTATTCTGGAATAAGAGTGAAAATGCCTTTAGAGACGGAGGATTCTTTGAAGACGCAATGGTATCAAGGGACTGTAACCTCAGCATCTGTTCCTGCCCACGGGCCTTGGAAGGGTTCTCCATGGCGTATGCTTGAGGATATATTAAATTCTCTGTTTCTTATCGAGGGAGAGGAAAGAACACAAGATACTAAAGATGTGTTGGAGTTGCTCACTGTAGATAATTTCATTCTTGATGGTTTATTGAGAACTGGATTTGAGTATTTTTCAATTACTCCCTCATTGTTGAACATGTATCGTTGTCTGGATTTTTTGGTGTTGGATTATGTGGAGTTTGTTCCGGTTGCTAGGTGTGTTGTTACATGGGAAGAAACTGATGCTCTGCGGAGTGCTAAGTATGTGAGCCCTTGGGAAGTTGAACTTGCTACACCCACTCCTCCAATACCCCCTCCTCTTCACCCAGCAAAGAAATTTAGAGGTCCTCAGAAATCTGGGATGGTGAATGGTGAAGCAGATCTGTTTTCACCTATGATGAGATTTGGCGATTCAACAATGGGGCAATTTAACCAATCATTGTTGAGTTTTAACTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAAATTTTTTCGGTGAATCTGGGTTATTCAATCCATATAATGAAACTACTCCACCACCATGTGATGAAAATTCCATGTGCAAACTGAATGCAGCGCCAAAGACACAAACGGTGTCTACTGACCTACAAATTGGTAGTGTGCATTCGGATACCTTATCGCCTGATAGTCAGGCTAGTGTTCTTTCCTTTGCCACAGGTACGGCTGAGAACCAGACCTGCAACTCAACTAAAGCTGGTGTAAATTCATTTCAATTGTTTGGTCAAGTCATCTATACGAATCAGCCTGTTCAAAATGGACATGACAGTGGTGCTAACAATGATGATGGTGAGAAGAAGCTAACATCTTTGTCTTGCGTAGAAGCAGCTGTACAGGTACTTGAGCTGGGGAGGAAGCTGACTACAAACTCGGGTCGGGTCGGAACTCCGAGAAAACCTAGGGCTCAACTAAAACGAAATTACCAGAAACTCATAGAAGAAAGAAGAAGAAAGAAGAGGAAGGAGAAGACTTTTGCTCTCTCAAATTACACTCTCTTTTCTCCTCGCCCTTCTACTCCATTCGTTTCTTCTTCCTCTAAAACCCTAGAATCCACATCCCTTATTCACCAACCTCTTTGTCTTCTTCATAATCCTCGCCATCGCTCTCGTCTTTGTAACTCATTAATAAGTTTCTCCCCAGTTACTCGTTCTTTCGCATCCTGTCTTTCTGCTCATGATTCTGTTCCCAATGTAAATGAAGAAGAGGATGATGGAAAAGCTATGGAAAAGGATGGATATCAGTTTGATGGATATAGCTTGCAGACCCTCATCGATGTATACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAATTGAGGCAAGAATAAAAATAATTGGGAGGGAGAAAGATGGGTTGTCCCAGAAAGTGTCCAGTATATCCACGGAGATAACATCTGGAAAAGAGAAATATATACGCTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAGGAACAACATACCGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTACCAATGATTGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACGTAAGCTATCAGGGAATATACAAGCAATTTGTCGAGACGTTGAGGAGCTGGCGTGTCTCGGCCGTTGCCACAGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCTCGAGAGGAGTCGCAGGAGATCAAGGAAGGGATCATTATTCAAGAAATACGACGCGGGTTTATGCTCGGTGAACGGGTTCTAAGACCAGCAAGAGTAAAGGTTTCAAAAGGTCCCGGTAGGAAGAATTCCCCTACAATCGACGCCGAGCAACAACCTGCAACTGCTGCTGGAGTAGATGAACACTGA 2949 43.78 MMDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVLSNPTTKCIVTAADYSADSLSDEVRLKLNLNPIRPGESGSEVVSEFGCSDDGSGKMNRIEKFAKILTSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNSQIGGGGRYSVEEKRSGDGGSDNFSRSNIGKVPAEAVANAAELAAQFKPFEVVYYPRAGFSEFVVPAEKVNKSMNYQWYSGIRVKMPLETEDSLKTQWYQGTVTSASVPAHGPWKGSPWRMLEDILNSLFLIEGEERTQDTKDVLELLTVDNFILDGLLRTGFEYFSITPSLLNMYRCLDFLVLDYVEFVPVARCVVTWEETDALRSAKYVSPWEVELATPTPPIPPPLHPAKKFRGPQKSGMVNGEADLFSPMMRFGDSTMGQFNQSLLSFNSFPAGMQGARQNFFGESGLFNPYNETTPPPCDENSMCKLNAAPKTQTVSTDLQIGSVHSDTLSPDSQASVLSFATGTAENQTCNSTKAGVNSFQLFGQVIYTNQPVQNGHDSGANNDDGEKKLTSLSCVEAAVQVLELGRKLTTNSGRVGTPRKPRAQLKRNYQKLIEERRRKKRKEKTFALSNYTLFSPRPSTPFVSSSSKTLESTSLIHQPLCLLHNPRHRSRLCNSLISFSPVTRSFASCLSAHDSVPNVNEEEDDGKAMEKDGYQFDGYSLQTLIDVYREAFLDGDQKTVSEIEARIKIIGREKDGLSQKVSSISTEITSGKEKYIRLQADFDNFRKRSEKEQHTVKNNAQKEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIIIQEIRRGFMLGERVLRPARVKVSKGPGRKNSPTIDAEQQPATAAGVDEH 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17909532 17918565 - Lsi08G009440.1 Lsi08g00944 668870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00944 982 Gene3D - 786 898 IPR013805 -
Lsi08g00944 982 CDD B3_DNA 107 207 IPR003340 GO:0003677
Lsi08g00944 982 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 904 959 IPR009012 GO:0006457
Lsi08g00944 982 PRINTS GrpE protein signature 854 869 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 PRINTS GrpE protein signature 826 842 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 PRINTS GrpE protein signature 936 955 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 PRINTS GrpE protein signature 909 924 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 ProSitePatterns grpE protein signature. 912 955 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 Hamap Protein GrpE [grpE]. 750 957 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 Gene3D - 104 208 IPR015300 -
Lsi08g00944 982 SMART B3_2 107 209 IPR003340 GO:0003677
Lsi08g00944 982 Pfam GrpE 803 957 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 Gene3D - 301 348 - -
Lsi08g00944 982 Coils Coil 652 672 - -
Lsi08g00944 982 MobiDBLite consensus disorder prediction 954 982 - -
Lsi08g00944 982 CDD GrpE 822 955 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lsi08g00944 982 Gene3D Head domain of nucleotide exchange factor GrpE 902 957 IPR009012 GO:0006457
Lsi08g00944 982 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 806 899 IPR013805 -
Lsi08g00944 982 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 346 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi08g00944 982 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 420 625 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi08g00944 982 Pfam Auxin response factor 263 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi08g00944 982 SUPERFAMILY DNA-binding pseudobarrel domain 102 209 IPR015300 -
Lsi08g00944 982 PANTHER AUXIN RESPONSE FACTOR 2 346 - -
Lsi08g00944 982 PANTHER AUXIN RESPONSE FACTOR 420 625 - -
Lsi08g00944 982 Pfam B3 DNA binding domain 107 208 IPR003340 GO:0003677
Lsi08g00944 982 ProSiteProfiles B3 DNA-binding domain profile. 107 209 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00944 - - - csv:101216118 599.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01740 Lsi-Chr1:16188869 Lsi08g00944 Lsi-Chr8:17909532 1.01E-12 dispersed
Lsi02g01882 Lsi-Chr2:24687815 Lsi08g00944 Lsi-Chr8:17909532 8.52E-07 dispersed
Lsi05g00568 Lsi-Chr5:7036514 Lsi08g00944 Lsi-Chr8:17909532 1.91E-11 dispersed
Lsi08g00944 Lsi-Chr8:17909532 Lsi10g01262 Lsi-Chr10:16880026 5.18E-06 dispersed
Lsi08g00944 Lsi-Chr8:17909532 Lsi01g01337 Lsi-Chr1:11579871 1.11E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006011 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25776 PF01025 GrpE 5.80E-40 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00944 Lsi_Chr08 FPKM 3.992386 4.796585 4.701831 5.301682 28.252241 23.898066 40.214199 5.28614 6.520648 7.937881