Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00945 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATCAAGACTAATGTAGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTACTTCGGATGTGAGCTTGGTGCGCAATCCAAGTTCGATGAGAAAACCGGGACTTCTCTTGTAAATGGTGCTCATGAGACAGCAAAGCTGGCTGGTCTTCTCGAAAACTTCATCAAGAAATATGTTCAATGCTATGGATGTGGAAACCCTGAGACTGAGATAATCATCACGAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGATAAACTCACAACGTTTATTCTCAAGAATCCTCCCGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGACTTAAGGAGGGTGAGGCTGCTGACGAGGAGCAGAAGAAAATAAAGAAGGATTCGCTCAAGAAGAAAAGCACAAGTACTACAAAGGATGCTGTAACCAAAGTTCCAAGCAAGAAAAAGAATAATGGCTCAGATGAGGATCATTCTCCAACTCGTAGCCATGCTGGTGATAATAACCAAGCAGCTGATGACGATGACGACGACGATGTGCAGTGGCAAACAGACACTTCTTTAGAGGCAGCCAAGCAGCGTATTCAGGAGCAGTTGAGCGCTGTCACTGCTGATATGGTCATGCTCTCTACTACTGAAGAGAACAAGTCGTTAAAGAAGTCCCCTCAGCACCCTGAGCACGAGAAGTCTGCAGTCAATGGAAACAAGAATGGGAATGGAGTTTCTACCCATGGTGCCCTCGTTCAAGAGATCAAAGATTATTTGAAGAAAGGTTCCTCCGCAGCTGATCTCAAATCATTCTTGGAATCACTTTTCGGAACTCGCCAAGAGATTGTGAATGCCTTGGTTGAGGCTTTATTCGATGGTGTCGGTAAAGGCTTCTCAAAGGAGGTAATGAAAAAGAAGAAGTTCCTGGCTGCAGCTGCCGCTCAGGAAGGATCACAGATAATTCTTTTGCGCGCCATCGAATCTTTCTGTCTCAACACAAGTCCAGAGGCAGGTAAGGAGGTTGCTCTAGTCCTGAAATCGTTATACGACAGCGATGTAATAGAGGAGGAATTCGTACTAGAGTGGTACCAACAGGGTGTGGCTGGTGCTAACAAAAGCTCTCAAATCTGGAAGTATGTAAAGCCCTTCATCGAATGGCTCCAGAATGCCGAGTCGGAGACAGAAGACGAGTAA 1347 45.06 MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKIKKDSLKKKSTSTTKDAVTKVPSKKKNNGSDEDHSPTRSHAGDNNQAADDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEENKSLKKSPQHPEHEKSAVNGNKNGNGVSTHGALVQEIKDYLKKGSSAADLKSFLESLFGTRQEIVNALVEALFDGVGKGFSKEVMKKKKFLAAAAAQEGSQIILLRAIESFCLNTSPEAGKEVALVLKSLYDSDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEDE 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17924831 17926177 - Lsi08G009450.1 Lsi08g00945 668871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00945 448 CDD W2_eIF5 297 446 - -
Lsi08g00945 448 ProSiteProfiles W2 domain profile. 289 448 IPR003307 GO:0005515
Lsi08g00945 448 MobiDBLite consensus disorder prediction 148 218 - -
Lsi08g00945 448 SUPERFAMILY ARM repeat 301 442 IPR016024 -
Lsi08g00945 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 448 - -
Lsi08g00945 448 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lsi08g00945 448 Gene3D - 105 145 - -
Lsi08g00945 448 MobiDBLite consensus disorder prediction 143 235 - -
Lsi08g00945 448 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lsi08g00945 448 Coils Coil 159 179 - -
Lsi08g00945 448 Pfam eIF4-gamma/eIF5/eIF2-epsilon 370 448 IPR003307 GO:0005515
Lsi08g00945 448 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lsi08g00945 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 448 IPR045196 GO:0003743|GO:0006413
Lsi08g00945 448 Gene3D - 2 104 - -
Lsi08g00945 448 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lsi08g00945 448 MobiDBLite consensus disorder prediction 272 286 - -
Lsi08g00945 448 Gene3D - 296 439 - -
Lsi08g00945 448 MobiDBLite consensus disorder prediction 268 296 - -
Lsi08g00945 448 SMART 542_3 357 444 IPR003307 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01204 Lsi-Chr2:15464005 Lsi08g00945 Lsi-Chr8:17924831 2.48E-08 dispersed
Lsi11g00960 Lsi-Chr11:14849742 Lsi08g00945 Lsi-Chr8:17924831 8.02E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00945 K03262 - csv:101210873 773.852