Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00951 ATGGAGCATTTTCAGAACGACGATCTTGCGTATATTGTGGATGATTATTATGAAGTCGACGATTTTGACGACGGTCAATTTTTCTCTGATGACGAATTGCATACTAATCAGGATACGGAGCACATAGACTCCGACTTTGAGGACGACATCGATACAAGCACGCCGAGGACGGATACCTCTGCTTTGGATGTTAGGAATGGGAAAGATATCCAGGGAATACCTTGGGAGAGGTTCACCTTTACCAGGGATACCTATCGGGAAAATCGTTTGAGCCAGTACAAGAACTATGAGAGCCTGTCAAGCTCTCGAGCGGAACTGGAAAAGGAATGCTTGCAAGTGGAGAAGGGGAATAATTTTTATGACTTCCAGTTCAATACGAGGCTTGTTAAATCAACAATTGTTCATTTTCAGCTAAGAAATCTCTTGTGGGCAACTTCTAAGCATGATGTATACCTTATGCAAAACTTCTCAGTTATGCACTGGTCTTCATTGCTTCGGAGAGGCAAAGAAGTACTCAATGTGGCAAAACAAATTGTTCCCACTTTGAAACGTCCTGGAGTCTCGTCCCAGTCTTTGTCCAGAGTGCAGATAAGTACAATGACAGTTAAGGACAACTTAATCGTGGCTGGTGGTTTTCAAGGGGAACTAATTTGCAAGTACTTGGATCATCCTGGAGTTGCATTCTGCACCAAAATGACAACAGAAGAAAACGCAATCACAAACGCTGTTGATATATTTCATAATCCAAATGGTGCATTGAGGGTCGTCACAGCAAATAATGATGCAAAAGTTAGGATTTACGATGCCAAGACTTTCGCTTGCCTCAACGGCTTCACATTTGGCTGGTCCGTAAATAACACCTCTGTTAGTCCAGATGGAAAGATGCTTGCAGTGCTTGGAGACAGCACAGAGTGTCTGCTTGCAGATGCCAACTCTGGCAAAGTGATCGAGAGCCTGAAAGGGCACTTGGATTACTCGTTTGCTTCTGCGTGGCACCCTGATGGACACATTTTAGCGACCGGGAACCAAGATACCACCTGCAGGCTGTGGGACATAAGGAATACGTCCAAGTCCCTAGCCGTGCTCAAGGGAAGAATGGGAGCAATCAGATGTGTGAAATTCAGCTCCGACGGTAAATTCCTATCAACGGCGGAGCCTGCAGATTTCGTCCATATCTACGAAAGTCGCACCGGTTATGAACAAGCACAAGAAATCGATCTGTTTGGTGAAATTGCTGGAATATCGTTCAGTCCGGACACAGAAGCTCTATTTGTTGGCGTGGCTGATCGAACCTATGGTAGTGTATTAGAGTTCAACAAACGACATCATAATTACATAGATTCCATCTTCTAG 1353 44.42 MEHFQNDDLAYIVDDYYEVDDFDDGQFFSDDELHTNQDTEHIDSDFEDDIDTSTPRTDTSALDVRNGKDIQGIPWERFTFTRDTYRENRLSQYKNYESLSSSRAELEKECLQVEKGNNFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNFSVMHWSSLLRRGKEVLNVAKQIVPTLKRPGVSSQSLSRVQISTMTVKDNLIVAGGFQGELICKYLDHPGVAFCTKMTTEENAITNAVDIFHNPNGALRVVTANNDAKVRIYDAKTFACLNGFTFGWSVNNTSVSPDGKMLAVLGDSTECLLADANSGKVIESLKGHLDYSFASAWHPDGHILATGNQDTTCRLWDIRNTSKSLAVLKGRMGAIRCVKFSSDGKFLSTAEPADFVHIYESRTGYEQAQEIDLFGEIAGISFSPDTEALFVGVADRTYGSVLEFNKRHHNYIDSIF 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17995063 18000304 + Lsi08G009510.1 Lsi08g00951 668877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00951 450 SMART WD40_4 271 309 IPR001680 GO:0005515
Lsi08g00951 450 SMART WD40_4 213 268 IPR001680 GO:0005515
Lsi08g00951 450 SMART WD40_4 312 351 IPR001680 GO:0005515
Lsi08g00951 450 SMART WD40_4 355 394 IPR001680 GO:0005515
Lsi08g00951 450 Gene3D - 173 449 IPR015943 GO:0005515
Lsi08g00951 450 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
Lsi08g00951 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Lsi08g00951 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Lsi08g00951 450 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Lsi08g00951 450 PANTHER OS03G0386000 PROTEIN 1 449 - -
Lsi08g00951 450 SUPERFAMILY WD40 repeat-like 203 441 IPR036322 GO:0005515
Lsi08g00951 450 MobiDBLite consensus disorder prediction 38 58 - -
Lsi08g00951 450 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00951 - - - csv:101222353 852.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02352 Lsi-Chr4:30725760 Lsi08g00951 Lsi-Chr8:17995063 0 dispersed
Lsi07g00057 Lsi-Chr7:599100 Lsi08g00951 Lsi-Chr8:17995063 4.46E-175 dispersed
Lsi08g00951 Lsi-Chr8:17995063 Lsi01g00842 Lsi-Chr1:6715721 9.43E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00951 Lsi_Chr08 FPKM 0.032049 0.0 0.161555 0.071064 0.0 0.601582 0.0 0.109721 0.147307 0.0