Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00953 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCGTATTTTCCTCCTCCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCATCCAAACAGAGTCGACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCCATCGGACTCAATTACTTAACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAAGTAGCCAGAAATCAGAGCAACAGCGGCGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATAGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACTGCCGAAGAAGCCGCTTTAGCCTACGACAAAGCCGCTTACAAACTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCGTTACACTCCGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCAGATCGAAGGAAATCGAGATCATCGGGCTCTTCTACCGTCGGATCTGCGTCTCAGACGCCGACGGTGATCGATTCCGACGACGATCTGAAGACGGCGGATGCTAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCAGCAGGATCTTCGCCTTTATCGGATCTGACGTTCCCGGATACGACGGATTCGCCATGGGAACAAGCTACAGAAAGCTGTATGTTGGAGAAATATCCATCGGAAATCGATTGGGCTTCGATTCTCACATCTTGA 1083 50.97 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPPPSSSSSFPDFSFSSSIQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSGGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSRSSGSSTVGSASQTPTVIDSDDDLKTADARSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDTTDSPWEQATESCMLEKYPSEIDWASILTS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18020199 18021281 + Lsi08G009530.1 Lsi08g00953 668879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00953 360 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Lsi08g00953 360 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Lsi08g00953 360 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Lsi08g00953 360 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Lsi08g00953 360 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
Lsi08g00953 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 357 - -
Lsi08g00953 360 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Lsi08g00953 360 MobiDBLite consensus disorder prediction 251 344 - -
Lsi08g00953 360 MobiDBLite consensus disorder prediction 265 283 - -
Lsi08g00953 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 357 - -
Lsi08g00953 360 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Lsi08g00953 360 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Lsi08g00953 360 MobiDBLite consensus disorder prediction 299 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01699 Lsi-Chr3:28310174 Lsi08g00953 Lsi-Chr8:18020199 6.71E-25 dispersed
Lsi07g00713 Lsi-Chr7:7653533 Lsi08g00953 Lsi-Chr8:18020199 1.24E-38 dispersed
Lsi08g00953 Lsi-Chr8:18020199 Lsi09g01142 Lsi-Chr9:18328018 6.69E-35 dispersed
Lsi04g02353 Lsi-Chr4:30737737 Lsi08g00953 Lsi-Chr8:18020199 6.78E-106 transposed
Lsi01g00754 Lsi-Chr1:5900067 Lsi08g00953 Lsi-Chr8:18020199 5.36E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25777 PF00847 AP2 4.80E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00953 K09286 - csv:101222833 582.793