Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00955 ATGACCAACCAGAAAGCTTCTCTTCCCAAAGCCAAATCACGAATCGGTGTGGCCTTTACAGTCGCTAGAATTGGTGGGTTTATGGCTAATATTTCTAAAAAAAAGCTTTTAAAAAGAACTGAAAATGGCGGTGGCGGCGGCGGAGGAGGTGGAGGTGGCCGAGGCAGAGCCATTGCTTCCTCTGTTGATTTGATGAGAGCTTCTTCTCCCACTCGTCTTAACTCTCATATCTCTCTTTCTCAATCCCCTTGGATTTTTCAACTTCCTTCTGCACTCAACATGTTCGACCAAATTACAACCGCCTCTAGAGGCAAACAAATTGTCATGTTTTTGGATTACGATGGCACTCTTTCCCCTATTGTTGAAGATCCTGATAGAGCATTCATGACTAATGAGATGAGAACTGCAGTAAAAAATATTGCAACGTGTTTTCCAACCGCCATAGTCAGTGGAAGATGTAAAGACAAAGTTTATGAGTTTGTTGGATTGGCAGAGCTGTTCTATGCAGGGAGCCATGGAATGGACATACAAGGCCCAACAAAAGGCTACAATAATAAATACAAGAAAGGCAATGAAGCAGTGCTTTTCCAACCGGCAAGTGAGCTGCTGCCCATGATTGACAAGGTACATAAAACCTTGTCAGACATAACAAAGTCGATTACTGGAGCTAAAGTGGAAAACAACAAGTTCTGCATTTCTGTGCATTTTCGCTGCGTCGATGAAAAAAAATGGGGTGCATTAGCGGAGCAAGTAAAATCGGTGGTTAATCAATATCCTAAATTGATTCTGAGTTTAGGAAGAAAGGTATTATTTTCTACTCTATTTCTTTTCAACATTTATGGAAAAATCCTAGTATCTCACCCACACGTGCCAAACCTTGTTTTGCAAAGTAAAGGATTAGGGTTTGGAATCCTTGTGTCAAAATTCCCCAAGGAAACTTGTGCTTCTTTTTCCTTGCAAGAACCATCCGAGGTAGAGGAGTTTCTTTGTCGTCTTGTAGATTGGAAAAGATCAATGGGAACATTATTATCCCATTCCACATTATCTGATTAA 1053 40.93 MTNQKASLPKAKSRIGVAFTVARIGGFMANISKKKLLKRTENGGGGGGGGGGGRGRAIASSVDLMRASSPTRLNSHISLSQSPWIFQLPSALNMFDQITTASRGKQIVMFLDYDGTLSPIVEDPDRAFMTNEMRTAVKNIATCFPTAIVSGRCKDKVYEFVGLAELFYAGSHGMDIQGPTKGYNNKYKKGNEAVLFQPASELLPMIDKVHKTLSDITKSITGAKVENNKFCISVHFRCVDEKKWGALAEQVKSVVNQYPKLILSLGRKVLFSTLFLFNIYGKILVSHPHVPNLVLQSKGLGFGILVSKFPKETCASFSLQEPSEVEEFLCRLVDWKRSMGTLLSHSTLSD 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18053300 18056515 + Lsi08G009550.1 Lsi08g00955 668881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00955 350 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 294 339 - -
Lsi08g00955 350 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 29 270 - -
Lsi08g00955 350 TIGRFAM T6PP: trehalose-phosphatase 105 257 IPR003337 GO:0003824|GO:0005992
Lsi08g00955 350 Gene3D - 109 190 IPR023214 -
Lsi08g00955 350 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 294 339 IPR044651 GO:0004805|GO:0005992
Lsi08g00955 350 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 270 IPR044651 GO:0004805|GO:0005992
Lsi08g00955 350 Pfam Trehalose-phosphatase 110 270 IPR003337 GO:0003824|GO:0005992
Lsi08g00955 350 Gene3D - 191 269 - -
Lsi08g00955 350 SUPERFAMILY HAD-like 108 334 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00955 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101223071 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00171 Lsi-Chr7:1829827 Lsi08g00955 Lsi-Chr8:18053300 2.66E-87 dispersed
Lsi07g01330 Lsi-Chr7:19463459 Lsi08g00955 Lsi-Chr8:18053300 1.48E-41 dispersed
Lsi08g00955 Lsi-Chr8:18053300 Lsi05g00081 Lsi-Chr5:1531558 4.18E-22 dispersed
Lsi01g00755 Lsi-Chr1:5923523 Lsi08g00955 Lsi-Chr8:18053300 6.72E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00955 Lsi_Chr08 FPKM 2.684244 2.423851 2.796769 3.056878 1.836027 1.446265 1.521778 3.689022 3.450631 3.716866