Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00957 ATGGCGGAAGAACAAGAAGAACAAGAACAAAATTCTTCTTCAATCTACAACAACGATGACGGCTTTGATTCTCTTCCCGATTCTCTCATTCTTCTGATCTTCAACTCTGTTTCCGATGTCAAAACTTTGATCCGTTGCAGAGCCGTTTCCAAGCGTTTCAACTCCCTCGTTCCTCATTCCGATTCCCTTTCTCTCAAGGTTGATTGCGTCATTTCCTCCGACTCCGACTCCGATTCAGATTCCGATCAAAACTCCTTCCTCCTCACCTTCTTCAAATCCGTCGTCAAATCCTTCTTCCATTTGATTTCCCCTATTCTTGTCCAATCCGAATCACAAAACTCTCCAGCGCAAATCCTCCGTCAGTTCCGCCGGATCCAGCGCCTTCAGATCGAGTTTCCGACTGGAGATCTCAAGGTCGAGAGAGTCGTTAAATGGATAGCGGAGTTTGGTGACGCGCTTAACAGCTGTGTGATTTTGATTTTTCGAGGAATTCGGAATGGAGAGATTGTAGCGGATGATGTCGATTTTGATTTCATGGGAGGGCTGAAATCGAAGGTGTTCATGACGATTAGTACTCTGATTACGGCGTCGGCGAGGCACCACGTGTTGGCGGAGGTGGTGGAGGAGCATTTGGAGATGGAGAATTTGGTTTTGAGAGACAGGGGAGGGGAAGGCGCGGTGGTGATGGAGAAGAATGGTTTAGAGGAGTTGAGGAGATCGAGAGTGAGCGGCAGAGGAGAGGTGGCGGAGTGGAGGCGGACGAGAACAAGGGTTCCGAGCACGACGGTGAGAATGAGGCACCGGGGGATCGTGGAGCTCCGGCGAGGGATGTGGATGGAGGATGCCACGTTGGTGGTGGTGAGGCCCACTGGAAATGCCAGCAAGAGTGGAGTTGCTGACGTGGAGAAAGATGATGCAGACGTGGCACTGAGGGCATTTGAAGGTGATGATGTGTACAGAGAGGCAGTGGAAGCGTTACTAAAGAAGGGCAAAAAATATCAGTTAGAAATGAACTCTTTCTAG 1023 49.76 MAEEQEEQEQNSSSIYNNDDGFDSLPDSLILLIFNSVSDVKTLIRCRAVSKRFNSLVPHSDSLSLKVDCVISSDSDSDSDSDQNSFLLTFFKSVVKSFFHLISPILVQSESQNSPAQILRQFRRIQRLQIEFPTGDLKVERVVKWIAEFGDALNSCVILIFRGIRNGEIVADDVDFDFMGGLKSKVFMTISTLITASARHHVLAEVVEEHLEMENLVLRDRGGEGAVVMEKNGLEELRRSRVSGRGEVAEWRRTRTRVPSTTVRMRHRGIVELRRGMWMEDATLVVVRPTGNASKSGVADVEKDDADVALRAFEGDDVYREAVEALLKKGKKYQLEMNSF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18075371 18076393 + Lsi08G009570.1 Lsi08g00957 668883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00957 340 Gene3D - 21 68 - -
Lsi08g00957 340 Pfam F-box-like 23 58 IPR001810 GO:0005515
Lsi08g00957 340 SMART fbox_2 25 66 IPR001810 GO:0005515
Lsi08g00957 340 PANTHER BNAA07G10620D PROTEIN 17 340 - -
Lsi08g00957 340 SUPERFAMILY F-box domain 13 69 IPR036047 GO:0005515
Lsi08g00957 340 PANTHER OS05G0510400 PROTEIN-RELATED 17 340 IPR044809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00957 - - - csv:101203038 479.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00134 Lsi-Chr1:1378660 Lsi08g00957 Lsi-Chr8:18075371 3.40E-54 dispersed
Lsi06g00556 Lsi-Chr6:7093586 Lsi08g00957 Lsi-Chr8:18075371 4.19E-40 dispersed
Lsi08g00957 Lsi-Chr8:18075371 Lsi02g00905 Lsi-Chr2:8668919 4.64E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g390 . . . . . . . . . . . . . Car12g00139 Sed04g0136 . Cpe07g00127 Bhi04g00750 Tan02g2380 Cmetu03g1402 . Hepe10g0511 . Lcy13g1571 Cla08g01100 Cam08g1554 Cec08g1127 Cco08g1254 Clacu08g1256 . Cre08g1038 . . . . . . . Cme03g01514 . . . . . . . . . . . Cma12g00151 . . . . . . . . . . . . . . . . . . . Lsi08g00957 . Chy03g01023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009181 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 2 1 0 3 1 1 1 1 1 1 1 1 1 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00957 Lsi_Chr08 FPKM 105.547058 100.656746 98.680061 101.388435 126.567375 137.271423 140.197388 141.557922 140.146133 135.827225