Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00960 ATGTCGCATTTTGGAAGATCAGGGCCTCCCGATATCAGAGATACTTACTCACTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGACAAGTATGGAAAAGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATACAAGTATGCGGATGAAGCACAGAAGGCAATTGATAAGCTTGACGGACGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTATGGTCCCAATGCTGAGAAAATTCGTAAGGGGAGAGTAATGGAGTCATCATCGAAGGCAAGGGGAAGATCAAGGAGTCGCAGTCCACGTTCAAGTTCTATATGTGAATGGGCGCAAGATGAAGGAGATCTTATAGGCATGGGAGGATTAAATTTTTACATTCTAGTCTATTGCTCAAAGAAATATGCAGTTGATTGTAATCTCATTGTTGCAAGCTGGTTATTCTACCCTTCTCTTATGGATTGCAAAAACATTTCAGGCACCGTGATGACCATAGGGATAAGGATTACAGGAGGAGAAGTCGCAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCTATCGTAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAGTAAAGATCGTAGGAGGGGAAGAGATGATGATGATGAACGGCGTAGTGCTAGCCACTCTGACAGAAGGGGATGGGTGGAGCCTTAGAGGTGGTCTTTTCCTGTTTTATTCACACTTTATTTTATTTTTATCACGTTCTCATGGTAGAGAGGGCTTCATGTCGCCCACCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAGGACACCACCATCTAGAGGTAGAAGTGACGATGAACATTCGCCAAAGATAGATAATGGCTCACCGGATGATAAACCAGTTGATTCTCGAAGTCCATCTCCTGCTAAATCCGATGCGGATGTGAGTCAACCTACCATGCTTATTACTTGTTGCTTATGA 1044 45.4 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKARGRSRSRSPRSSSICEWAQDEGDLIGMGGLNFYILVYCSKKYAVDCNLIVASWLFYPSLMDCKNISGTVMTIGIRITGGEVAVEAGRDMIVIDPTEVRENAIVVGVVVLVLTVVKIVGGEEMMMMNGVVLATLTEGDGWSLRGGLFLFYSHFILFLSRSHGREGFMSPTRHSPDTRRSISPRRTPPSRGRSDDEHSPKIDNGSPDDKPVDSRSPSPAKSDADVSQPTMLITCCL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18103253 18106578 - Lsi08G009600.1 Lsi08g00960 668886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00960 347 MobiDBLite consensus disorder prediction 299 326 - -
Lsi08g00960 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Lsi08g00960 347 PANTHER OS08G0486200 PROTEIN 1 129 - -
Lsi08g00960 347 MobiDBLite consensus disorder prediction 278 339 - -
Lsi08g00960 347 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 129 - -
Lsi08g00960 347 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lsi08g00960 347 Gene3D - 8 128 IPR012677 -
Lsi08g00960 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lsi08g00960 347 MobiDBLite consensus disorder prediction 103 125 - -
Lsi08g00960 347 SUPERFAMILY RNA-binding domain, RBD 9 120 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00960 K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8 - csv:101216322 229.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00960 Lsi-Chr8:18103253 Lsi05g01491 Lsi-Chr5:22709579 1.04E-11 dispersed
Lsi01g00040 Lsi-Chr1:450485 Lsi08g00960 Lsi-Chr8:18103253 1.57E-07 transposed
Lsi03g01765 Lsi-Chr3:29059000 Lsi08g00960 Lsi-Chr8:18103253 4.67E-12 transposed
Lsi04g00876 Lsi-Chr4:8595103 Lsi08g00960 Lsi-Chr8:18103253 8.09E-11 transposed
Lsi06g00546 Lsi-Chr6:6865743 Lsi08g00960 Lsi-Chr8:18103253 8.98E-09 transposed
Lsi06g00607 Lsi-Chr6:8420751 Lsi08g00960 Lsi-Chr8:18103253 1.78E-09 transposed
Lsi08g00697 Lsi-Chr8:15269829 Lsi08g00960 Lsi-Chr8:18103253 6.04E-11 transposed
Lsi09g00890 Lsi-Chr9:10458969 Lsi08g00960 Lsi-Chr8:18103253 2.39E-07 transposed
Lsi03g00764 Lsi-Chr3:10732406 Lsi08g00960 Lsi-Chr8:18103253 2.76E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g401 . Blo12g00705 . Bda03g00492 Bpe02g00103 Bpe04g00448 . Bma01g02615 Cmo05g00520 Cmo12g00119 . . . Car12g00143 Sed04g0139 . Cpe07g00130 Bhi04g00752 Tan02g2384 Cmetu03g0980 . Hepe10g0506 . Lcy13g1568 Cla08g01104 Cam08g1557 Cec08g1130 Cco08g1257 Clacu08g1259 . Cre08g1041 . . Cone17ag1223 Cone20ag0501 . . . Cme03g01517 . Blo18g00134 Bda11g00763 . . . . . . . . Cma12g00154 Cma05g00497 Car05g00445 . Cpe11g00435 . . . . . . . . . . . . . . . Lsi08g00960 . Chy03g01026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001751 2 2 2 1 2 2 4 2 2 1 2 2 3 2 2 2 2 4 4 2 2 2 2 2 2 2 1 4 5 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00960 Lsi_Chr08 FPKM 1.738739 1.902227 0.0 0.0 1.810792 2.619006 2.531994 0.0 1.296419 1.312449