Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00966 ATGGAGAAGGAGAGAGAGCACCTTGTTTACTTGGCCAGACTTGCAGAACAAGCTGAGAGATATGATGAAATGGTGGAAATGATGAAGAGCGTAGCAAAGTTGGACGTAGAACTTACTGTGGAGGAGAGGAACCTGGTCTCTGTGGGATATAAGAATGTTATTGGGGCAAGAAGAGCCTCATGGCGTATTTTATCTTCTATTGAACAGAAGGAAGAAGGAAAGAAGAACGAGGTTAATGTGAAGAGGGTAAAGGAGTACAGGCAGAGGGTTGAAGACGAGCTGGCGAGAATTTGCCAGGACATTTTAACAGTTGTCGACAAGCACCTCATTCCATCTTCATCCTCTGGAGAATCCAATGTTTTTTACTATAAGATGAAGGGGGATTATAACCGATACTTAGCAGAGTTTAAATCTGGCCGTGAACGTGAAGAAGCTGCAGACCAGTCGATGAAGGCCTATGAGGTAAGTTCAATTCTTTTTGTGTTTCCTGAAGCCTCTATTAGTAACCGGAGTTATTTTCTGATGCAGTCTGCCTCAAGCATTGCAAGCTCTGATCTGCCTCCAACTCATCCCATCAGACTTGGCTTGGCGCTTAACTTTTCTGTTTTCTACTATGAGATATTAAATTCCCCGGAGAGGGCATGCCACCTTGCTAAACAAGCTTTTGATGATGCCATAGCTGAACTTGATGGCCTCAATGAAGAATCCTACAAGGACAGTACCCTCATTATGCAGCTGCTGAGGGATAATCTCACGTTATGGACCTCAGATCTCCCAGATGAGGGAGGTGAGCAATCTAAAGCTGCTGATGAACCTTAA 819 44.2 MEKEREHLVYLARLAEQAERYDEMVEMMKSVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEGKKNEVNVKRVKEYRQRVEDELARICQDILTVVDKHLIPSSSSGESNVFYYKMKGDYNRYLAEFKSGREREEAADQSMKAYEVSSILFVFPEASISNRSYFLMQSASSIASSDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDDAIAELDGLNEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSKAADEP 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18146289 18149508 - Lsi08G009660.1 Lsi08g00966 668892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00966 272 Gene3D - 1 268 IPR036815 -
Lsi08g00966 272 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Lsi08g00966 272 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Lsi08g00966 272 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Lsi08g00966 272 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 2 157 - -
Lsi08g00966 272 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 168 269 - -
Lsi08g00966 272 PANTHER 14-3-3 PROTEIN 168 269 IPR000308 -
Lsi08g00966 272 PIRSF 14-3-3 164 269 IPR000308 -
Lsi08g00966 272 PIRSF 14-3-3 1 158 IPR000308 -
Lsi08g00966 272 PANTHER 14-3-3 PROTEIN 2 157 IPR000308 -
Lsi08g00966 272 SUPERFAMILY 14-3-3 protein 4 257 IPR036815 -
Lsi08g00966 272 SMART 1433_4 5 268 IPR023410 -
Lsi08g00966 272 Pfam 14-3-3 protein 11 155 IPR023410 -
Lsi08g00966 272 Pfam 14-3-3 protein 168 255 IPR023410 -
Lsi08g00966 272 ProSitePatterns 14-3-3 proteins signature 2. 237 256 IPR023409 -
Lsi08g00966 272 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00966 Lsi-Chr8:18146289 Lsi08g00980 Lsi-Chr8:18276685 9.06E-119 dispersed
Lsi08g00896 Lsi-Chr8:17327349 Lsi08g00966 Lsi-Chr8:18146289 1.45E-119 transposed
Lsi11g01569 Lsi-Chr11:23995462 Lsi08g00966 Lsi-Chr8:18146289 2.71E-146 transposed
Lsi04g02235 Lsi-Chr4:29388901 Lsi08g00966 Lsi-Chr8:18146289 7.67E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00966 K06630 - csv:101222677 452.21