Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00974 ATGGCTTCTTTTACTTCATCAATGCTTCATTTCTTCTTTGCTATTTCCTTATTCCAAATCTCCTTCGCACGGTTGCTAAACGAGTTCGTTCCAGACCAATCCCAGTCGCTTAAATACCACAACGGCGTTCTTCTCTCCGGCAAAATCAGTGTCAATCTCATTTGGTATGGCAAATTCAAGCCATCTCAGAAAGCAATCGTCACTGATTTCATTAACTCCCTCTCTTACTCTCGACCCCAAGTCGGCAAGCCATCGGTTTCCGCTTGGTGGAAGGAAACAGAGAAGTATTACAAATTGTCTAAGAAGAAATCAACTCCCCTGTTTCTCAATCTCGGCAAGCAAATCTTGGATGAGAATTACTCGTTGGGGACATCACTCACCAACAAACAAATCCTTCAATTGGCTTCAAAGGGTGAGCAAAAGAATGCGATTAATGTTGTTTTGACGGCTTCTGATGTTACTGTTGAAGGGTTCTGTATGAGCCGTTGTGGCACTCATGGGTCCGGTTCTGCCGTGAGGTCCGGCGGTGCTAAAGGGAAGAATTACAAATTTGCTTACATCTGGGTTGGAAATTCCGAAACTCAATGTCCTGGACATTGTGCTTGGCCATTCCATCAGCCGATATACGGACCTCAATCGCCTCCCCTGATTGCGCCCAACGGCGATATGGGAATTGACGGAATGATTATTAACCTTGCTAGTCTTTTGGCTGGAACTGCTACGAATCCATTTGGTAACGGCTACTTTCAGGGACCGGCTGAGGCACCATTGGAGGCGGCTTCTGCTTGTACTGGAGTTTATGGGAAAGGGGCTTATCCTGGTTACGCCGGCGAGTTGCTGACGGATTCCGTTACTGGCGGAAGCTATAACGCTAACGGCGCTAATGGAAGGAAATATTTGCTTCCGGCATTGTATGATCCTTCTACATCGGCTTGTTCGACTTTGGTTTGA 951 46.48 MASFTSSMLHFFFAISLFQISFARLLNEFVPDQSQSLKYHNGVLLSGKISVNLIWYGKFKPSQKAIVTDFINSLSYSRPQVGKPSVSAWWKETEKYYKLSKKKSTPLFLNLGKQILDENYSLGTSLTNKQILQLASKGEQKNAINVVLTASDVTVEGFCMSRCGTHGSGSAVRSGGAKGKNYKFAYIWVGNSETQCPGHCAWPFHQPIYGPQSPPLIAPNGDMGIDGMIINLASLLAGTATNPFGNGYFQGPAEAPLEAASACTGVYGKGAYPGYAGELLTDSVTGGSYNANGANGRKYLLPALYDPSTSACSTLV 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18210097 18211047 + Lsi08G009740.1 Lsi08g00974 668900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00974 316 Pfam Phosphate-induced protein 1 conserved region 37 315 IPR006766 -
Lsi08g00974 316 PANTHER PROTEIN EXORDIUM-RELATED 1 316 - -
Lsi08g00974 316 PANTHER PROTEIN EXORDIUM-LIKE 5 1 316 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00974 - - - csv:101221106 566.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02242 Lsi08g00974 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00954 Lsi-Chr3:18297358 Lsi08g00974 Lsi-Chr8:18210097 9.34E-129 dispersed
Lsi04g02242 Lsi-Chr4:29469725 Lsi08g00974 Lsi-Chr8:18210097 4.44E-143 dispersed
Lsi04g02243 Lsi-Chr4:29486393 Lsi08g00974 Lsi-Chr8:18210097 3.68E-132 dispersed
Lsi05g00890 Lsi-Chr5:15479266 Lsi08g00974 Lsi-Chr8:18210097 3.33E-65 dispersed
Lsi08g00974 Lsi-Chr8:18210097 Lsi10g00130 Lsi-Chr10:2017525 8.29E-47 dispersed
Lsi08g00972 Lsi-Chr8:18196425 Lsi08g00974 Lsi-Chr8:18210097 3.99E-110 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g430 . . . . . . . Bma01g02609 . Cmo12g00126 Cma01g01612 . . . Sed07g1190 . . Bhi04g00771 Tan02g2402 Cmetu07g0101 . Hepe10g0488 . Lcy13g1553 Cla08g01117 Cam08g1573 Cec08g1143 Cco08g1270 Clacu08g1274 . Cre08g1055 Cone4ag1329 Cone7ag1270 Cone17ag1212 . Lsi04g02242 Csa03g04453 . Cme03g01858 . . . . . Bpe14g00458 . . . . . Cma12g00163 . . . . . Bhi09g02445 Tan01g3797 Cmetu04g2098 . Hepe01g2134 Mch11g0672 . . . . . . . . Lsi08g00974 Csa02g02158 Chy03g01361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00974 Lsi_Chr08 FPKM 1.029776 0.892093 238.72142 236.439651 93.269951 96.677673 97.608574 0.0 0.0 0.0