Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00975 AAATGCTTTGATGGGCCAGTCCTAGAAAGCCCACCAACGAACTCCATTGTCGCTCGAAAGAATCAACATCAGGAACCAGAAGCAGAAGCAGGTGCCACTTCGTTTCACCAGTTGATCCGACCATTATCGCCAATCCAATTCGACTTCTCGCTTTCTGTAGCAATGGAACAACCGCACTCTCATCAAACCCTTTTATCGCCGGACACCTCATGCCCACCGCCGTCATCTTCTTCCTCCTCCGCCCATGACGATTCTACTGCTGCATGTGGAACTTGCCGCAAATGCGGCGGCCCTACCACTCATGCTCCGCCGCCTCCTTGGTCGTCGGAAGTTTCACCACCGCCAAACTATCGCCCTATCAGAGCTCCGGCCATCAATCTCCCTCCGAACGAACAGTCCCGGCAAGCCATAATTCTCTCACCAGTTCCTCAAGCGGAGAAGGTACTTCCCGTTGGGCCTCCTTTTCTTTTTCAAGCTCCTTCCAAGAAAATCCAATCGCCTGACCATATCCGTAGCTTTAACGATTCTGATTCCGGCAAGAAGTTTTTAGGTTTTATTGTTGCCCTCTCTGAATCCATGCGTGGCCACAAAATATCTGATCCTTGCCATCAATCGGACACCGTGAATACTATTATTTCAATTATTCATACGTTGATTGATTGGGTCGATGAAATTCCTCCCACTGAGCAAGCAGCTCGATACGGAAATGTTTCGTACCGAACTTGGCACTCTCGTTTGGTCGAAAACAGCGATGATTTCATGCTACGGTTTCTTCCCGACGATCGGACATCCGCCAGTGTTGAATTAGTCCCGTATTTCACTGATAGCTTCGGAAATTCGAGCCGTATCGATTACGGCACGGGTCATGAAACTAATTTCGCTGCCTGGTTGTATTGCTTGGCGAGGTTGGGGCTTATTAAAGAAGAAGATTATCAAGCTGTTGTGGCTAGAGTGTTCGTCAAGTACCTGGAGTTAATGAGAAAGTTGCAATTGGTTTATTGTTTGGAGCCGGCGGGATCACACGGGGTTTGGGGTCTTGATGACTACCACTTTTTACCTTTCATTTTCGGGTCTTCTCAGTTGATTGACCATAAATATATGAAACCCAAATCCATTCACAATCCGGATATCTTGGATAACTTTTCTTCTGAGTATCTCTATCTCTCATGTATTGCTTTCGTGAAGAAAGTGAAGAAAGGTCTGTTTGCAGAGCACTCTCCTTTGCTGGATGATATCAGTGGGGTTCCTGCTTGGAAGAAGGTGAACAGTGGGTTACTCAAAATGTATAAAGCGGAAGTGTTGGAGAAAGTTCCTATCATGCAACATTTTCTCTTCGGCTGGCTCATCGAATGGTATGACTCTCTGGATAAGAAATTGACCTTCAACCATTTTGGTAGTTCATTGCGGAGCTTGATTCTTATTTGTGGTGAGACACTGGGGTTGGGGTTGGAGGTGGGAGGAAGTAGAGACAAGGAGAGGAAAAAATGGAAGGAGGATAATAGCTCTCCTTTTCGACCGCTAACTGATGAGCACTTCAGTCAGCCAATCATCAGTCCGATTGGGGAGACTAGTTGA 1575 46.73 KCFDGPVLESPPTNSIVARKNQHQEPEAEAGATSFHQLIRPLSPIQFDFSLSVAMEQPHSHQTLLSPDTSCPPPSSSSSSAHDDSTAACGTCRKCGGPTTHAPPPPWSSEVSPPPNYRPIRAPAINLPPNEQSRQAIILSPVPQAEKVLPVGPPFLFQAPSKKIQSPDHIRSFNDSDSGKKFLGFIVALSESMRGHKISDPCHQSDTVNTIISIIHTLIDWVDEIPPTEQAARYGNVSYRTWHSRLVENSDDFMLRFLPDDRTSASVELVPYFTDSFGNSSRIDYGTGHETNFAAWLYCLARLGLIKEEDYQAVVARVFVKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNPDILDNFSSEYLYLSCIAFVKKVKKGLFAEHSPLLDDISGVPAWKKVNSGLLKMYKAEVLEKVPIMQHFLFGWLIEWYDSLDKKLTFNHFGSSLRSLILICGETLGLGLEVGGSRDKERKKWKEDNSSPFRPLTDEHFSQPIISPIGETS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18214432 18220697 + Lsi08G009750.1 Lsi08g00975 668901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00975 524 MobiDBLite consensus disorder prediction 58 127 - -
Lsi08g00975 524 CDD PTPA 182 446 IPR004327 GO:0019211
Lsi08g00975 524 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A ACTIVATOR 135 453 - -
Lsi08g00975 524 SUPERFAMILY PTPA-like 157 454 IPR037218 GO:0019211
Lsi08g00975 524 MobiDBLite consensus disorder prediction 99 122 - -
Lsi08g00975 524 MobiDBLite consensus disorder prediction 58 86 - -
Lsi08g00975 524 MobiDBLite consensus disorder prediction 492 524 - -
Lsi08g00975 524 MobiDBLite consensus disorder prediction 1 32 - -
Lsi08g00975 524 Gene3D - 346 461 IPR043170 -
Lsi08g00975 524 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 160 451 IPR004327 GO:0019211
Lsi08g00975 524 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 135 453 IPR004327 GO:0019211
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00975 K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator - csv:101220873 739.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02244 Lsi08g00975 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02244 Lsi-Chr4:29490897 Lsi08g00975 Lsi-Chr8:18214432 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g434 . . . . . . . . . . . . Car01g01231 . Sed04g0151 . . Bhi04g00772 Tan02g2403 Cmetu03g1910 . Hepe10g0487 . Lcy13g1552 Cla08g01118 Cam08g1574 Cec08g1144 Cco08g1272 Clacu08g1275 . Cre08g1056 . . Cone17ag1209 . Lsi04g02244 Csa03g04454 . Cme03g01856 . . . Bda13g01396 . Bpe14g00459 . Bma02g00136 Sed13g2138 Cmo01g01659 . . . . Car09g00494 . Cpe02g00367 Bhi09g02448 Tan01g3799 Cmetu04g0033 . Hepe01g2136 Mch11g0674 . . . . . . . . Lsi08g00975 Csa02g02159 Chy03g01358 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003204 2 3 1 1 1 1 1 2 2 1 1 2 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 3 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00975 Lsi_Chr08 FPKM 4.01104 5.153541 3.33893 6.256676 4.624207 4.405455 5.849516 5.532392 4.146694 10.453583