Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00980 ATGGCTGCCGCCCCCTCTGTTCGTGAGGAGAATGTTTACATGGCCAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCCCTCGAGAAGGAGGAGCTCACCGTCGAGGAGAGAAACCTCCTTTCTGTCGCCTACAAGAACGTCATCGGCGCTCGCAGGGCTTCCTGGCGTATCATTTCCTCCATCGAACAGAAGGAGGAGAGCCGAGGCAACGACGACCATGTCTCTGTGATCCGTGACTACAGATCTAAAATTGAGACCGAACTCTCCAATATTTGCGATGGAATCCTCAAGCTTCTCGATTCCAGACTCATTCCCTCCGCCGCTTCCGGAGATTCCAAGGTTTTTTACCTCAAAATGAAGGGCGACTACCATAGATACCTTGCCGAATTCAAAACCGGAGCCGAACGCAAGGAAGCTGCCGAAAGCACTCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCTGAGTTGCCTCCTACACATCCGATCCGACTTGGGTTGGCCCTTAACTTCTCTGTATTTTACTATGAAATTTTGAATTCACCCGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCTATCGCTGAATTGGATACCCTTGGCGAGGAATCCTACAAAGATAGTACTTTGATCATGCAGCTTCTTCGCGACAATCTCACTCTCTGGACATCGGACATGCAGGATGATGGTGCTGATGAGATTAAAGAAGCTCCTCCAAAGCGTGAGGATGAAAAGCAGTGA 786 50.38 MAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASLEKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIETELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPPKREDEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18276685 18278948 + Lsi08G009800.1 Lsi08g00980 668906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00980 261 PANTHER 14-3-3 PROTEIN 5 253 IPR000308 -
Lsi08g00980 261 SMART 1433_4 8 251 IPR023410 -
Lsi08g00980 261 MobiDBLite consensus disorder prediction 242 261 - -
Lsi08g00980 261 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 5 253 - -
Lsi08g00980 261 PIRSF 14-3-3 2 250 IPR000308 -
Lsi08g00980 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Lsi08g00980 261 Coils Coil 14 41 - -
Lsi08g00980 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Lsi08g00980 261 MobiDBLite consensus disorder prediction 243 261 - -
Lsi08g00980 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Lsi08g00980 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Lsi08g00980 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Lsi08g00980 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Lsi08g00980 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Lsi08g00980 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Lsi08g00980 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Lsi08g00980 261 Gene3D - 2 251 IPR036815 -
Lsi08g00980 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02246 Lsi08g00980 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00966 Lsi-Chr8:18146289 Lsi08g00980 Lsi-Chr8:18276685 9.06E-119 dispersed
Lsi08g00980 Lsi-Chr8:18276685 Lsi11g01569 Lsi-Chr11:23995462 4.79E-126 dispersed
Lsi07g00987 Lsi-Chr7:13570780 Lsi08g00980 Lsi-Chr8:18276685 8.80E-163 transposed
Lsi04g02246 Lsi-Chr4:29500335 Lsi08g00980 Lsi-Chr8:18276685 3.80E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00980 K06630 - csv:101220164 507.294