Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00983 ATGCCGAGACGGCCGGGAGAGCCGCTTTTCTTAGAGGAAATTGAAGTTGACCCTCCAAAAATCGGGGAGGTTCGGATCAAAATTCTTTGTACTTCCCTCTGTCATTCTGATGTTACTGTCTGGAATATGAGACAAGAACTTTTCTCATTCCCCATCATTTTTGGACACGAAGCTGTCGGAATTGTGGAAAGTGTAGGAGAAGAAGTGAGGGAAGTGAAAGAAGGGGAAATGGTGTTGCCTGTGTTTCAATCAAATTGCAAAGAATGCAAAGAGTGCAAGAGTTGGAAGAGCAATAAATGCAGTGTTTTTGGGGGCAAATTTGGAATAGGAATGCCAAGGGATGGCACAAGCAGATTTAGGGATGTGAATGGACACCCCTTGAACCATTTTTTATATGTTTCAAGCTTTTCGGAGTATACAGTTGTTGATGTCCATAACCTTGTTCCAATCAATCCGGAGCTTCCTATGGATAAGGCCACCTTGTTTGGCTGTGGAGTTCCCACTGGGATTGGAGCTGCCTGGAAGGTTGCTGACGTGGACGAGGGTTCCACCGTTGCTATCTTCGGTCTTGGTATTGTTGGACTTGCGGTTGCGGAAGGATCAAAACGTCGCAAAGCTTCAAAGATCATTGGCATTGATTTGAATCCTAAAAAGTTTGAGATTGCAAAAAAGTTTGGGGTGACTGATTTTATCAACCCAGCTACTTGTGGAGATAAGCCAATTCATGAAGTTATTAAGGAACAAACTGATGGGGGAGCAGACTACTGCTTTGAGTGCATTGGCTTGACTTCCCTCATGGAAGAAGCTATCAAAAGCACTAGACAGAGTTGGGGAAAGACAGTGATTTTGGGAGTAGAGAAAGAAGGGGCTCCATTCAAAGTGAACTCCTTTGAAATAATAAATGGGATCACCATCACCGGCGCTCTTTTTGGAGGTCTTAAGCCAAAATCAGATGTTCCAATGCTTATCAACAAGTATTTGAACAAAGAACTTTATTTGGATGAATTAATATCACACGAAGTTGGGTTTGAAGACATCAACAAAGCATTTGATTTGCTTCTCTATGGAAAATCCCTTCGTTGCCTCATTTGGATTCATGATTCCAACTCTACATCTTGA 1119 42.54 MPRRPGEPLFLEEIEVDPPKIGEVRIKILCTSLCHSDVTVWNMRQELFSFPIIFGHEAVGIVESVGEEVREVKEGEMVLPVFQSNCKECKECKSWKSNKCSVFGGKFGIGMPRDGTSRFRDVNGHPLNHFLYVSSFSEYTVVDVHNLVPINPELPMDKATLFGCGVPTGIGAAWKVADVDEGSTVAIFGLGIVGLAVAEGSKRRKASKIIGIDLNPKKFEIAKKFGVTDFINPATCGDKPIHEVIKEQTDGGADYCFECIGLTSLMEEAIKSTRQSWGKTVILGVEKEGAPFKVNSFEIINGITITGALFGGLKPKSDVPMLINKYLNKELYLDELISHEVGFEDINKAFDLLLYGKSLRCLIWIHDSNSTS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18288648 18292319 + Lsi08G009830.1 Lsi08g00983 668909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00983 372 Pfam Alcohol dehydrogenase GroES-like domain 22 150 IPR013154 -
Lsi08g00983 372 SUPERFAMILY GroES-like 4 175 IPR011032 -
Lsi08g00983 372 Pfam Zinc-binding dehydrogenase 193 315 IPR013149 -
Lsi08g00983 372 PANTHER ALCOHOL DEHYDROGENASE-LIKE 2 3 365 - -
Lsi08g00983 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 328 IPR036291 -
Lsi08g00983 372 PANTHER ALCOHOL DEHYDROGENASE 3 365 - -
Lsi08g00983 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 55 69 IPR002328 GO:0008270|GO:0016491
Lsi08g00983 372 SUPERFAMILY GroES-like 316 364 IPR011032 -
Lsi08g00983 372 Gene3D - 169 308 - -
Lsi08g00983 372 Gene3D - 3 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00983 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101209737 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02017 Lsi-Chr1:27562268 Lsi08g00983 Lsi-Chr8:18288648 6.08E-07 dispersed
Lsi08g00815 Lsi-Chr8:16494747 Lsi08g00983 Lsi-Chr8:18288648 9.98E-63 dispersed
Lsi08g00816 Lsi-Chr8:16498699 Lsi08g00983 Lsi-Chr8:18288648 2.57E-154 dispersed
Lsi08g00983 Lsi-Chr8:18288648 Lsi09g01805 Lsi-Chr9:26812654 6.07E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g444 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01126 Cam08g1582 Cec08g1152 Cco08g1279 Clacu08g1283 . Cre08g1065 . . . . . . . Cme03g01849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00983 Csa02g02165 Chy03g01352 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00983 Lsi_Chr08 FPKM 6.459073 6.04561 2.183769 2.145392 3.162721 2.722315 3.371078 0.501963 0.328245 0.501567