Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00986 ATGGCCTACTCCTTTAAAGCTCCATTTTTTGCCTTAGCCACCATTGCCATTTCTATGGTTATCCCAAGCTTCGCCGCTGTTTACACCGTCGGTGACACCACCGGTTGGTCCACTGGCGTCAATTACAACTCCTGGACTTCCGGAAAGACTTTTGTCGTAGGCGACACACTCATGTTCAATTATGGAGGTGGACACACAGTGGATGAAGTAAGTGTGAGTGACTATAACTCTTGTACAGCCGGAAATTCCATTAGTAGTGATAGCTCTGGCGCCACATCCATCACTCTCAAGAAGCCTGGGACTCATTACTTCATTTGTGGTGCATTTGGTCACTGTACCAACGGCATGAAACTCGCCGTCACGGCTGCCGATGCTGGAGGTCCCGCTTCTACAACCCCAGCTCCATCTCCCACCGGAGATGGAGCTCCGCCGTCCACAGCACCAACTTCTTCTCTTGGAGACCCTGCTCCAACGGCAATGCCATCGTTTGATACTACTCCCAAAGATACCGACTCCTCGTTGCTGAACTCTTCGACATCCAAGGTGCCGGTGGAGGCATCTTACGCTACTGGTGTCTCTTCGTTTGCAGCGGTGGTTAGCGCTTGGGTTGCCGCTGTGGCCGCCTTGTTTGTTGCATTTTAG 642 51.87 MAYSFKAPFFALATIAISMVIPSFAAVYTVGDTTGWSTGVNYNSWTSGKTFVVGDTLMFNYGGGHTVDEVSVSDYNSCTAGNSISSDSSGATSITLKKPGTHYFICGAFGHCTNGMKLAVTAADAGGPASTTPAPSPTGDGAPPSTAPTSSLGDPAPTAMPSFDTTPKDTDSSLLNSSTSKVPVEASYATGVSSFAAVVSAWVAAVAALFVAF 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18327551 18328674 - Lsi08G009860.1 Lsi08g00986 668912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00986 213 MobiDBLite consensus disorder prediction 163 177 - -
Lsi08g00986 213 PANTHER BLUE COPPER PROTEIN-LIKE 16 205 - -
Lsi08g00986 213 MobiDBLite consensus disorder prediction 124 177 - -
Lsi08g00986 213 CDD Phytocyanin 26 122 - -
Lsi08g00986 213 Pfam Plastocyanin-like domain 36 116 IPR003245 GO:0009055
Lsi08g00986 213 PANTHER BLUE COPPER PROTEIN 16 205 IPR039391 GO:0009055
Lsi08g00986 213 Gene3D - 24 126 IPR008972 -
Lsi08g00986 213 ProSiteProfiles Phytocyanin domain profile. 26 124 IPR003245 GO:0009055
Lsi08g00986 213 SUPERFAMILY Cupredoxins 25 122 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00986 - - - csv:101219044 266.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02258 Lsi08g00986 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00390 Lsi-Chr3:4531986 Lsi08g00986 Lsi-Chr8:18327551 2.75E-14 dispersed
Lsi08g00986 Lsi-Chr8:18327551 Lsi10g00159 Lsi-Chr10:2565306 3.35E-29 dispersed
Lsi09g00360 Lsi-Chr9:3714690 Lsi08g00986 Lsi-Chr8:18327551 5.39E-15 dispersed
Lsi03g01256 Lsi-Chr3:23173609 Lsi08g00986 Lsi-Chr8:18327551 1.91E-19 transposed
Lsi10g00502 Lsi-Chr10:7177540 Lsi08g00986 Lsi-Chr8:18327551 3.30E-15 transposed
Lsi10g01112 Lsi-Chr10:15387657 Lsi08g00986 Lsi-Chr8:18327551 1.78E-12 transposed
Lsi04g02258 Lsi-Chr4:29623238 Lsi08g00986 Lsi-Chr8:18327551 5.35E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g453 . Blo12g00715 . Bda03g00478 Bpe02g00124 Bpe04g00433 Bma04g00446 Bma01g02602 Cmo05g00540 . Cma01g01628 Cma09g00579 . . . Cpe06g00440 . Bhi04g00926 . . . Hepe10g0421 . Lcy13g1473 Cla08g01130 Cam08g1587 Cec08g1157 Cco08g1283 Clacu08g1287 . Cre08g1069 . . Cone17ag1202 Cone20ag0526 Lsi04g02258 Csa03g04469 Chy04g00232 Cme03g01843 . . Bda11g00779 Bda13g01385 Bpe02g01525 Bpe14g00466 Bma01g00937 . Sed05g1577 Cmo01g01674 Cmo09g00563 . Cma05g00513 Car05g00463 Car09g00507 . Cpe02g00356 Bhi09g02470 Tan01g3819 Cmetu04g3088 . Hepe01g2150 . . Cla11g01403 Cam11g1460 Cec11g1487 Cco11g1484 Clacu11g1621 Cmu11g1438 Cre11g1857 Lsi08g00986 Csa02g02171 Chy03g01346 Cme04g00259
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002164 3 2 2 2 3 1 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 1 3 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00986 Lsi_Chr08 FPKM 45.375202 40.141071 51.213066 48.806488 53.435974 43.791832 49.790661 58.231972 59.723835 64.563423