Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00989 ATGGCGGTTACAATTAGCAGAAAACTTTTCCCTGTTGCTACTGGAACTACCCAACCAAACACCAATTGTTCCAGCTGCCCTTACGACTGCCCTTTTGACTGCTACGGTATTCCAGATTTCTACTTCTCACCGCCGCCGCCGCCGCCCCCGCCTACACTCACCGATCACCAAAAACAGCTTCCAACTATAATCATCATCCTAATTCTGTTCGTAGGATTTTTCATCGCTTTTAGTTTCTATATCATCGTCGTAAAATGCCGATCTTGGCAAAGTGGCTCCGGCAACGAAGGGACAGAGGCGTTGCAATCGGACGGCGGAGAAGGAGAGTTTATGAACGAGAATCAAATCGACCATCCAATTTGGTTCATCACCACCGTTGGACTGCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGAGCGAAGGTTTAATTGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGGTGTGTTGATACTTGGCTCAGAACTCATACCACTTGCCCTCTCTGTCGAGCTCATATTCTTACCGATTTCACGAACTCAAACTCTGCGAGGCCACCCAATTTAGGCCCTGTGAATCAAAACGAAGCTAATTTGAGTGTAAATGAGGAAACCCAGATGGAGAATGATGAGATTAATGGCGAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGAGAAGTTGGGGATCTTCAGATTGGGGAGATAGTTCCAAAAGAAGGGAATTTTGAATCTGATGAATCTAAAGTTGAAGGAAACGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAGCAACATGA 918 44.34 MAVTISRKLFPVATGTTQPNTNCSSCPYDCPFDCYGIPDFYFSPPPPPPPPTLTDHQKQLPTIIIILILFVGFFIAFSFYIIVVKCRSWQSGSGNEGTEALQSDGGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFTNSNSARPPNLGPVNQNEANLSVNEETQMENDEINGEVLVENEGVVSSGSSENRGDVVDEQREVGDLQIGEIVPKEGNFESDESKVEGNESMRNNEMDSSSAT 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18348886 18349803 + Lsi08G009890.1 Lsi08g00989 668915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00989 305 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Lsi08g00989 305 SMART FANCL_C_2 149 203 - -
Lsi08g00989 305 CDD RING-H2_PA-TM-RING 152 195 - -
Lsi08g00989 305 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 304 IPR044675 -
Lsi08g00989 305 MobiDBLite consensus disorder prediction 273 305 - -
Lsi08g00989 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Lsi08g00989 305 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 304 - -
Lsi08g00989 305 Pfam Ring finger domain 152 195 IPR001841 -
Lsi08g00989 305 SUPERFAMILY RING/U-box 143 202 - -
Lsi08g00989 305 MobiDBLite consensus disorder prediction 247 266 - -
Lsi08g00989 305 SMART ring_2 153 194 IPR001841 -
Lsi08g00989 305 MobiDBLite consensus disorder prediction 278 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00989 - - - cmo:103488086 493.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01879 Lsi-Chr5:25975125 Lsi08g00989 Lsi-Chr8:18348886 6.15E-39 dispersed
Lsi08g00989 Lsi-Chr8:18348886 Lsi09g01100 Lsi-Chr9:17598438 3.08E-36 dispersed
Lsi09g01410 Lsi-Chr9:22097973 Lsi08g00989 Lsi-Chr8:18348886 3.13E-07 transposed
Lsi01g00793 Lsi-Chr1:6243740 Lsi08g00989 Lsi-Chr8:18348886 1.87E-44 wgd
Lsi03g00730 Lsi-Chr3:9827304 Lsi08g00989 Lsi-Chr8:18348886 8.59E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00989 Lsi_Chr08 FPKM 5.075924 5.961999 11.397742 11.345735 37.226791 36.57246 37.76009 17.108513 17.571699 16.492073